BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0004.p (786 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_469540.1| similar to ATP dependent helicase [Listeria inn... 587 e-166 ref|ZP_00097605.1| COG1199: Rad3-related DNA helicases [Desulfit... 572 e-162 ref|NP_463690.1| similar to ATP dependent helicase [Listeria mon... 566 e-159 ref|NP_562113.1| probable helicase protein [Clostridium perfring... 563 e-159 ref|NP_814892.1| helicase, putative [Enterococcus faecalis V583]... 550 e-155 >ref|NP_469540.1| similar to ATP dependent helicase [Listeria innocua] pir||AD1457 ATP dependent helicase homolog lin0195 [imported] - Listeria innocua (strain Clip11262) emb|CAC95428.1| lin0195 [Listeria innocua] Length = 779 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 305/759 (40%), Positives = 445/759 (58%), Gaps = 12/759 (1%) Query: 25 LSVRTLVEYAFSSGSLEPGFRSGAAMAEGTRIHQHIQKQYKEGDRKEVYLKAEIPYEGLL 84 +SVR LVE+ SGS++ S EGT+IHQ +QK+ EG EV LK + + Sbjct: 6 ISVRRLVEFVLKSGSIDSRMTSSDRALEGTKIHQLLQKEAGEGYEAEVSLKLVRVIDDIS 65 Query: 85 FIIDGRCDGLLAGEDGRLIVEEIKSIAGPLDSTMEG-KEVHWAQALMYAYMIVMDQELPS 143 F ++GR DG++ GE +++EIK+ +D E + +HWAQ + Y +M+ +L Sbjct: 66 FTLEGRADGVINGE----MIDEIKTTEVEMDEITEDFRPLHWAQLICYGFMLAEKSDLAE 121 Query: 144 IEVKLTYVLRGSDEQRSLYRTAGREELEAFASETVARYAPFAKLKVHHKARREESIRSLD 203 + ++LTY E + R R+E+ F + +++YA +AK+ + +R +SI+ L Sbjct: 122 VTLQLTYYQVADKEVKQFTRVMSRKEMSTFVDDLLSKYAIWAKMSAAWEMKRNKSIQELT 181 Query: 204 FPFRDYRQGQRHFAAAVYKTTAEGVNLFAQAPTGIGKTMSTLFPAVKALGEGVVAGIFYL 263 FP+ YR+GQR A AVY+T + LF +APTGIGKTMSTLFP+VKA+GEG +FY Sbjct: 182 FPYDSYRRGQRELAIAVYRTVMDDEKLFCEAPTGIGKTMSTLFPSVKAMGEGKADKLFYF 241 Query: 264 TAKTVTRFAAQEAVXXXXXXXXXXXXITLTAKEKACFREEGLCGKESCPYADGYYDRVNA 323 TAKT+TR A++A+ +T+TAK+K CF +E C E C +A GYYDR+N Sbjct: 242 TAKTITRQVAEDALDEMRRKGLGARSVTITAKDKICFLDERKCDPEHCQFARGYYDRLNE 301 Query: 324 ALLDMLEHETLMTQEIIDAYARRHEVCPFEFSLDAAYACDMVICDYNYIYDPRISLKRLP 383 AL DML+ E +T+ +++A+AR++ +CPFE SLD A CD+++CDYNY++DP + LKR Sbjct: 302 ALFDMLQTEETITRSVVEAFARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRFF 361 Query: 384 EERKKKTVLLVDEAHNLVDRGREIFSASLTKAPFLNLQRQY-KTVNRKLGXXXXXXXXXX 442 + + LVDE HNLVDR R +FSA+L+K+ + ++R+ K ++KL Sbjct: 362 ADGPGRYTFLVDEVHNLVDRARSMFSATLSKSIIMQVKRELDKKTDKKLLNSVTAMNKIM 421 Query: 443 XXLRKSCNEDGEGHWAEYXXXXXXXXXXXXXXXXXXXXXXXXXXITPAGDGEDGLLDTYY 502 L K E+ + + + D +L+ Y+ Sbjct: 422 IALNKQLAEENKTIYVKKEALSDWNEAVLKFSYVAKDWLPKNTEAKAQAD----VLELYF 477 Query: 503 AVQGMLRTIKTYDERYVTYAEVRRGDVFLKLFNLDPSHLLQQMAKGFRSQILFSATLSPM 562 L+ + YD+RYVT R DV +K LDP+ LL + K S +LFSATL P+ Sbjct: 478 ESLRYLKIAELYDKRYVTQITRNRSDVLIKQLCLDPAFLLSEKLKLGASSVLFSATLRPI 537 Query: 563 SYYRDMIGAAEEDYSLRVASPFHKEQWEVSVLP-VSTRYRDRADSLIPLSDALRGMVA-R 620 YY +++G + L ASPF + + V +ST+Y+ R +SL + DAL M++ + Sbjct: 538 DYYTNLLGGNNDTSRLTFASPFKQNNMHLMVADYISTKYQRRENSLESVIDALYAMLSGK 597 Query: 621 KGNYLVFFPSYAYLQNVFEVFTDKYPEITTLVQGSGMGEQAREEFLASFRPDNPQTLLGF 680 KGNYL FFPS+ YL+ FE+F++KYPE+ Q S M E REEFLA+F +T +GF Sbjct: 598 KGNYLFFFPSFQYLETAFELFSEKYPEVRAQKQQSFMNEAEREEFLAAFETGREETFVGF 657 Query: 681 AVLGGIFSEGVDLPGDRLNGVMIVGVGLPQVGLERNLLRGYFGSQGKNGFDYAYVYPGMC 740 VLGG+FSEGVDL G+RL G IVGVGL Q+ +E +L++ Y+ GFDYAY PGM Sbjct: 658 CVLGGVFSEGVDLRGERLIGTAIVGVGLAQMNVESDLIKDYYNETIGRGFDYAYQIPGMN 717 Query: 741 KVQQAGGRLIRSESDRGIIVLADDRFLQQPYAGLLPEEW 779 KV QA GR+IR E D+G+++L ++RF + Y L P W Sbjct: 718 KVLQAVGRVIRGEKDQGVVLLIEERFATERYKALFPAHW 756 >ref|ZP_00097605.1| COG1199: Rad3-related DNA helicases [Desulfitobacterium hafniense] Length = 766 Score = 572 bits (1475), Expect = e-162, Method: Compositional matrix adjust. Identities = 318/757 (42%), Positives = 442/757 (58%), Gaps = 18/757 (2%) Query: 27 VRTLVEYAFSSGSLEPGFRSGAAMAEGTRIHQHIQKQYKEGDRKEVYLKAEIPYEGLLFI 86 +RTLVE+ G L GF SG+ MAEG HQ++QK+ + EV L+ +G Sbjct: 1 MRTLVEFVLRQGDLRMGFMSGSRMAEGIYAHQYLQKERGADYQPEVTLRTTAYQDGFSLE 60 Query: 87 IDGRCDGLLAGEDGRLIVEEIKSIAGPLDSTMEG-KEVHWAQALMYAYMIVMDQELPSIE 145 I GR DG+ E G +++EEIKS + LD E +HWAQA YAY++ ++L ++ Sbjct: 61 IHGRADGIFRNESG-VVIEEIKSTSLDLDLIDESYNNLHWAQAQCYAYIVANQEDLAQVQ 119 Query: 146 VKLTYVLRGSDEQRSLYRTAGREELEAFASETVARYAPFAKLKVHHKARREESIRSLDFP 205 V+LTY+ + E + ++ REELE F + V RY +A +R ESI L+FP Sbjct: 120 VQLTYIQLETHELKEFRKSLSREELEFFFKDLVERYCTWAHRLSAWTEQRNESISRLEFP 179 Query: 206 FRDYRQGQRHFAAAVYKTTAEGVNLFAQAPTGIGKTMSTLFPAVKALGEGVVAGIFYLTA 265 + YR+GQR AVYKT E L+ QAPTGIGKT+ T+FPA+K L EG+ IFYLTA Sbjct: 180 YPAYRKGQRELVVAVYKTIKEKHKLYVQAPTGIGKTLGTIFPALKCLLEGLETPIFYLTA 239 Query: 266 KTVTRFAAQEAVXXXXXXXXXXXXITLTAKEKACFREEGLCGKESCPYADGYYDRVNAAL 325 KT+TR A+ ++ +TLTAK+K CF E C E C YA GYYDR+ AL Sbjct: 240 KTITRTVAEGSLLMLQQQGLSLKRVTLTAKDKVCFCPECECTPEDCSYAKGYYDRLGPAL 299 Query: 326 LDMLEHETLMTQEIIDAYARRHEVCPFEFSLDAAYACDMVICDYNYIYDPRISLKRLPEE 385 D+ E + +E I+ AR H VCPFEFSL+ D+VICDYNY++DPR+ LKR E Sbjct: 300 EDIFERDH-WNREQIENCARNHGVCPFEFSLELTNWADLVICDYNYVFDPRVFLKRFFLE 358 Query: 386 RKKKTVLLVDEAHNLVDRGREIFSASLTKAPFLNLQRQYKTVNRKLGXXXXXXXXXXXXL 445 L+DEAHNLV+R RE+FSA L K FL+L+ + LG L Sbjct: 359 -GGDYAFLIDEAHNLVERAREMFSAQLNKEEFLHLKNLVEDQEPVLGKRLQTVNKNFLKL 417 Query: 446 RKSCNE-DGEGHWAEYXXXXXXXXXXXXXXXXXXXXXXXXXXITPAGDGEDGLLDTYYAV 504 +K E + + A Y TP ++ L + Y+ + Sbjct: 418 KKQGLEVEKDAPTALYSSLERVVNEAEKFFKKEE---------TPP--WKEKLTELYFNI 466 Query: 505 QGMLRTIKTYDERYVTYAEVRRGDVFLKLFNLDPSHLLQQMAKGFRSQILFSATLSPMSY 564 Q L T ++YDE Y+TY + DV +KLF +DPS L Q+ R+ + FSATLSP+ Y Sbjct: 467 QAFLHTAESYDEHYLTYYQYPEQDVRVKLFCVDPSQQLAQVLNKGRAAVFFSATLSPLEY 526 Query: 565 YRDMIGAAEEDYSLRVASPFHKEQWEVSVLP-VSTRYRDRADSLIPLSDALRGMV-ARKG 622 + ++G +E Y L++ SPF E + + +ST+Y R+ SL P+ + + +V + G Sbjct: 527 FIQVLGGEKESYKLQLPSPFPHENLCLMLQKQISTKYNQRSLSLDPIVEGITQLVQGKTG 586 Query: 623 NYLVFFPSYAYLQNVFEVFTDKYPEITTLVQGSGMGEQAREEFLASFRPDNPQTLLGFAV 682 NYLV+FPSY YL+ V E +PE L Q GM E REEFL +F+ + ++L+G A+ Sbjct: 587 NYLVYFPSYEYLERVRERLLQAHPEFKVLTQTMGMTEADREEFLEAFQEEPRESLVGLAL 646 Query: 683 LGGIFSEGVDLPGDRLNGVMIVGVGLPQVGLERNLLRGYFGSQGKNGFDYAYVYPGMCKV 742 LGGIF EG+DL G+RL+G +I+GVGLPQ+G ER+++R +F + GF++AY+YPGM KV Sbjct: 647 LGGIFGEGIDLTGERLSGAVIIGVGLPQIGTERDIIRAHFQERYGQGFEFAYMYPGMNKV 706 Query: 743 QQAGGRLIRSESDRGIIVLADDRFLQQPYAGLLPEEW 779 QA GR+IR+E DRG I+L D+RF + Y L P+EW Sbjct: 707 LQACGRVIRTEQDRGAILLIDERFARLSYRRLFPKEW 743 >ref|NP_463690.1| similar to ATP dependent helicase [Listeria monocytogenes EGD-e] pir||AF1094 ATP dependent helicase homolog lmo0157 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98372.1| lmo0157 [Listeria monocytogenes] Length = 779 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 305/763 (39%), Positives = 443/763 (58%), Gaps = 14/763 (1%) Query: 22 EIFLSVRTLVEYAFSSGSLEPGFRSGAAMAEGTRIHQHIQKQYKEGDRKEVYLKAEIPYE 81 ++ +SVR LVE+ SGS++ S EGT+IHQ +QK+ E EV L + + Sbjct: 3 KVRISVRRLVEFVRRSGSIDNRMTSSDRALEGTKIHQLLQKEAGEEYAAEVRLNLDRIVD 62 Query: 82 GLLFIIDGRCDGLLAGEDGRLIVEEIKSIAGPLDSTMEG-KEVHWAQALMYAYMIVMDQE 140 G+ F +DGR DG++ +GR+I +EIK+ P+D E + +HWAQ + Y +M+ + Sbjct: 63 GIAFSLDGRADGII---NGRMI-DEIKTTETPMDEITENFRPLHWAQLICYGFMLAEKSD 118 Query: 141 LPSIEVKLTYVLRGSDEQRSLYRTAGREELEAFASETVARYAPFAKLKVHHKARREESIR 200 L + ++LTY E + R REEL F + +++YA +AK + +R ++I+ Sbjct: 119 LAEVTLQLTYYQVVDKEVKQFQRVMSREELSVFVDDLLSQYAIWAKASAAWEMKRNKTIQ 178 Query: 201 SLDFPFRDYRQGQRHFAAAVYKTTAEGVNLFAQAPTGIGKTMSTLFPAVKALGEGVVAGI 260 L FP+ YR GQR A AVY+T + +LF +APTGIGKTMSTLFP +KA+GEG + Sbjct: 179 ELTFPYDSYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKL 238 Query: 261 FYLTAKTVTRFAAQEAVXXXXXXXXXXXXITLTAKEKACFREEGLCGKESCPYADGYYDR 320 FY TAKT+TR A++A+ +T+TAK+K CF +E C + C +A GYYDR Sbjct: 239 FYFTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDR 298 Query: 321 VNAALLDMLEHETLMTQEIIDAYARRHEVCPFEFSLDAAYACDMVICDYNYIYDPRISLK 380 +N AL DML+ E +T++++++YAR++ +CPFE SLD A CD+++CDYNY++DP + LK Sbjct: 299 LNEALFDMLQSEEAITRQVVESYARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLK 358 Query: 381 RLPEERKKKTVLLVDEAHNLVDRGREIFSASLTKAPFLNLQRQYKTVNRK--LGXXXXXX 438 R E K LVDE HNLVDR R ++SA+L K+ + ++R N K L Sbjct: 359 RFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSAVMQVKRGLDAKNNKRLLNAINVMN 418 Query: 439 XXXXXXLRKSCNEDGEGHWAEYXXXXXXXXXXXXXXXXXXXXXXXXXXITPAGDGEDGLL 498 +K + DG Y T + D +L Sbjct: 419 KDMIALNKKLKDLDG----TIYVQKNELIDWNESVLKFTFVAKEWLPQNTQSEIQAD-VL 473 Query: 499 DTYYAVQGMLRTIKTYDERYVTYAEVRRGDVFLKLFNLDPSHLLQQMAKGFRSQILFSAT 558 + Y+ + YD+RYVT GD+ +K LDPS LL + K S +LFSAT Sbjct: 474 ELYFESLRYVAIADFYDDRYVTQVTKSHGDLEIKQVCLDPSFLLSERLKLGSSSVLFSAT 533 Query: 559 LSPMSYYRDMIGAAEEDYSLRVASPFHKEQWEVSVLP-VSTRYRDRADSLIPLSDALRGM 617 L P+ YY +++G E+ + +SPF ++ + V +ST+Y+ R +S+ + DAL + Sbjct: 534 LRPIDYYTNLLGGQEDTSRMIFSSPFKQKNMHLLVADYISTKYQMRENSMEAVVDALYAL 593 Query: 618 VA-RKGNYLVFFPSYAYLQNVFEVFTDKYPEITTLVQGSGMGEQAREEFLASFRPDNPQT 676 V+ GNYL FFPS+ YLQ V+++F +KYP I Q + M E+ RE FL F+ +N +T Sbjct: 594 VSGENGNYLFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEERREHFLERFQAENVET 653 Query: 677 LLGFAVLGGIFSEGVDLPGDRLNGVMIVGVGLPQVGLERNLLRGYFGSQGKNGFDYAYVY 736 L+GF VLGG+FSEGVDL G+RL G +VGVGL Q+ E +L++ Y+ GFDYAY Sbjct: 654 LIGFCVLGGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQI 713 Query: 737 PGMCKVQQAGGRLIRSESDRGIIVLADDRFLQQPYAGLLPEEW 779 PGM KV QA GR+IR ESDRG+++L ++RF Y L P W Sbjct: 714 PGMNKVLQAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHW 756 >ref|NP_562113.1| probable helicase protein [Clostridium perfringens] dbj|BAB80903.1| probable helicase protein [Clostridium perfringens str. 13] Length = 781 Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust. Identities = 302/765 (39%), Positives = 439/765 (57%), Gaps = 10/765 (1%) Query: 18 MDHAEIFLSVRTLVEYAFSSGSLEPGFRSGAAMAEGTRIHQHIQKQYKEGDRKEVYLKAE 77 M + I +S+R LVE+ GS++ ++ EG + H+ IQ Y E DR EV LK + Sbjct: 1 MKNELIKISIRNLVEFVLRRGSIDSRIKASVRALEGIKGHKKIQSSYSEKDRAEVTLKED 60 Query: 78 IPYEGLLFIIDGRCDGLLAGEDGRLIVEEIKSIA-GPLDSTMEGKEVHWAQALMYAYMIV 136 I +E ++GR DG+L E+ ++I++EIK+ +D + E+HWAQA +YAY+ Sbjct: 61 IDFEDFTLRVEGRADGILE-ENEKIIIDEIKTTTKNVMDIDYDFNELHWAQAKVYAYIYS 119 Query: 137 MDQELPSIEVKLTYVLRGSDEQRSLYRTAGREELEAFASETVARYAPFAKLKVHHKARRE 196 ++ L SI V+LTY + L + EL F + + +Y + L+ R Sbjct: 120 KEKNLDSIIVQLTYYNVEDFGTKFLRKEYSFHELREFFYDLIEKYKEWILLEKRWIDFRN 179 Query: 197 ESIRSLDFPFRDYRQGQRHFAAAVYKTTAEGVNLFAQAPTGIGKTMSTLFPAVKALGEGV 256 +SI + +FPF+ YR+GQR A VYK+ EG FA+APTGIGKTMSTLFPAVKALG Sbjct: 180 DSIENFNFPFKSYRKGQRELAIRVYKSITEGKKCFAEAPTGIGKTMSTLFPAVKALGAKE 239 Query: 257 VAGIFYLTAKTVTRFAAQEAVXXXXXXXXXXXXITLTAKEKACFREEGLCGKESCPYADG 316 IFY+TAKT TR A + + +TAKEK C EE C E CPYA+G Sbjct: 240 TQKIFYITAKTTTREIANNTLRIMREKGLNLRSVNITAKEKCCKMEEKKCIPEYCPYANG 299 Query: 317 YYDRVNAALLDMLEHETLMTQEIIDAYARRHEVCPFEFSLDAAYACDMVICDYNYIYDPR 376 Y+DRVN AL + L H+ E I+ ++ + +CPFEFSL+ + CD+VICDYNYI+DP+ Sbjct: 300 YFDRVNIALKEALRHKEEYDLEYINKLSKEYNICPFEFSLELSNFCDVVICDYNYIFDPQ 359 Query: 377 ISLKRLPEERKKKTVLLVDEAHNLVDRGREIFSASLTKAPFLNLQRQYKTVNRKLGXXXX 436 SLK + E + K +L+DEAHNL+DRGR ++S+ + K FL L+R++K+ ++ + Sbjct: 360 ASLKGILEGKAKDYTILIDEAHNLLDRGRSMYSSKIFKDDFLKLKREFKSKDKGIYNSLD 419 Query: 437 XXXXXXXXLRKSCNEDGEGHWAEYXXXXXXXXXXXXXXXXXXXXXXXXXXITPAGDGEDG 496 RK E + + + Sbjct: 420 RANKYLIEKRKVLEN------LETKSLVEKEEPSDLYGILRGFLEKVDIYESKSSEENSN 473 Query: 497 LLDTYYAVQGMLRTIKTYDERYVTYAEVRRGDVFLKLFNLDPSHLLQQMAKGFRSQILFS 556 LL+ Y+ V L Y E + T ++ ++ L + LDPS +L+ + F+S I+FS Sbjct: 474 LLELYFNVYEFLNICGYYGEDFTTLYKLDGNNLELSINCLDPSRILKSIMNRFKSVIIFS 533 Query: 557 ATLSPMSYYRDMIGAAEEDYSLRVASPF-HKEQWEVSVLPVSTRYRDRADSLIPLSD-AL 614 ATL PM Y++++ GA E DYS+ + SPF +K + + VST Y +R +L + + + Sbjct: 534 ATLLPMEYFKELYGAQEGDYSVNLTSPFDYKNKLTIVGKDVSTTYSNRKRTLPKIVNYII 593 Query: 615 RGMVARKGNYLVFFPSYAYLQNVFEVFTDKYPEITTLVQGSGMGEQAREEFLASFRPDNP 674 +++GNYLVFFPSY Y+ V E + + + + QG M E+ +EEFL+ F+ Sbjct: 594 ECAKSKRGNYLVFFPSYEYMWMVHEEIKKREVDFSLVAQGDHMNEEEKEEFLSLFKEGGE 653 Query: 675 QTLLGFAVLGGIFSEGVDLPGDRLNGVMIVGVGLPQVGLERNLLRGYFGSQGKNGFDYAY 734 +T LG AVLGG FSEG+DL D+L GV+I+GVG+P++ LER ++ Y+ S GKNGFDYAY Sbjct: 654 KTHLGLAVLGGHFSEGIDLTLDKLIGVIIIGVGMPKICLERESIKEYYNSIGKNGFDYAY 713 Query: 735 VYPGMCKVQQAGGRLIRSESDRGIIVLADDRFLQQPYAGLLPEEW 779 VYPG+ KV QA GR IR+E D+G+++L DDR+ Y LLP EW Sbjct: 714 VYPGIIKVLQAAGRCIRTEKDKGVVLLLDDRYFTNKYKSLLPREW 758 >ref|NP_814892.1| helicase, putative [Enterococcus faecalis V583] gb|AAO80962.1| helicase, putative [Enterococcus faecalis V583] Length = 793 Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust. Identities = 287/760 (37%), Positives = 438/760 (57%), Gaps = 9/760 (1%) Query: 25 LSVRTLVEYAFSSGSLEPGFRSGAAMAEGTRIHQHIQKQYKEGDRKEVYLKAEIPYEGLL 84 ++VR +VE+ GS++ S EG+R+H+ +QK+ +KEV LK E+P G Sbjct: 7 IAVRQVVEFILRRGSIDSRHVSEHTPQEGSRLHRMLQKEAGSLYQKEVSLKIEVPLNGHN 66 Query: 85 FIIDGRCDGLLAGEDGRLIVEEIKSIAGPLDS-TMEGKEVHWAQALMYAYMIVMDQELPS 143 + ++GR DG+ E G+++++EIK+ + E E+ W QA+ Y +M ++L Sbjct: 67 YCVEGRADGIFVKETGQVVIDEIKTSEPAFEELPPEKVELFWYQAMCYGHMYCQQEQLSE 126 Query: 144 IEVKLTYVLRGSDEQRSLYRTAGREELEAFASETVARYAPFAKLKVHHKARREESIRSLD 203 I ++LTY + + R L F ++ + RY + K + R +S+++L Sbjct: 127 ITLQLTYYQTTTKQITRQERHFTEAALAEFFTDLMKRYEQWVIFKEEWRILRNKSLKNLS 186 Query: 204 FPFRDYRQGQRHFAAAVYKTTAEGVNLFAQAPTGIGKTMSTLFPAVKALGEGVVAGIFYL 263 FP+ +YR+GQR A AVYKT LF +APTG GKTMSTLFPA+KA+GE IFYL Sbjct: 187 FPYGEYRKGQRELAVAVYKTILSKQRLFVEAPTGTGKTMSTLFPAMKAIGEEEGERIFYL 246 Query: 264 TAKTVTRFAAQEAVXXXXXXXXXXXXITLTAKEKACFREEGLCGKESCPYADGYYDRVNA 323 TAKT+TR A++AV ITLTAK+K CF E C E CP+ADGYYDR+N Sbjct: 247 TAKTITRQVAEDAVKALSEKQAQTKSITLTAKDKICFLTERNCTPEHCPFADGYYDRLNE 306 Query: 324 ALLDMLEHETLMTQEIIDAYARRHEVCPFEFSLDAAYACDMVICDYNYIYDPRISLKRLP 383 L D+L+HE +T+E+I+ YA++H++CPFE SLDA+ CD++I DYNY++DP + L+R Sbjct: 307 GLWDLLQHENHLTREVIERYAQKHQLCPFELSLDASLWCDLIIGDYNYLFDPTVYLRRFF 366 Query: 384 EERK--KKTVLLVDEAHNLVDRGREIFSASLTKAPFLNLQRQYKTVNRKLGXXXXXXXXX 441 EE + ++ + LVDE HNLV+R RE++SA++++ L +Q++ + + +L Sbjct: 367 EEPQSAEENIFLVDETHNLVNRSREMYSAAISRNAVLQIQKRLQKESVQLKRACQKVLTT 426 Query: 442 XXXLRKSCNEDGEGHWAEYXXXXXXXXXXXXXXXXXXXXXXXXXXITPAGDGEDGLLDTY 501 + C E +A+ I +L Y Sbjct: 427 FDDIEAICEEKDTDFFAQRAPIDSLVKQIHRLTEVIAEWLPENQHIEELA----SILSFY 482 Query: 502 YAVQGMLRTIKTYDERYVTYAEVRRGDVFLKLFNLDPSHLLQQMAKGFRSQILFSATLSP 561 + LR + YD + T +R D +K F +DP++LL Q ++ ILFSA+L+P Sbjct: 483 FDCLSYLRISEYYDNGFYTSISLRNYDCVVKQFCVDPAYLLSQRLDKGKASILFSASLTP 542 Query: 562 MSYYRDMIGAAEEDYSLRVASPFHKEQWEVSV-LPVSTRYRDRADSLIPLSDALRGMVAR 620 ++YY++++G EE R+ PF +E + + + T Y++R S +S+ L + Sbjct: 543 LNYYQEVLGGGEESLRYRIPYPFPEENQLLMIGSHLQTTYKNREKSYPQISELLGKLSET 602 Query: 621 K-GNYLVFFPSYAYLQNVFEVFTDKYPEITTLVQGSGMGEQAREEFLASFRPDNPQTLLG 679 K GNYL+FFPSYAY+ +V++VF+ +YP++ T +QG+ + E+ RE FLA F+ + +T +G Sbjct: 603 KTGNYLIFFPSYAYMDDVYQVFSQRYPQVKTQIQGTDLNEKEREAFLAEFKENPQETFIG 662 Query: 680 FAVLGGIFSEGVDLPGDRLNGVMIVGVGLPQVGLERNLLRGYFGSQGKNGFDYAYVYPGM 739 F VLGGIFSEG+DL G RL G +IV VGLPQ+ E+ L+R ++ + GF +AY PGM Sbjct: 663 FCVLGGIFSEGIDLKGTRLIGTIIVSVGLPQMNPEQELIRTFYQEERGQGFQFAYQIPGM 722 Query: 740 CKVQQAGGRLIRSESDRGIIVLADDRFLQQPYAGLLPEEW 779 KV QA GR+IR D+G ++L D+RF P W Sbjct: 723 NKVLQAAGRVIRDAQDKGFVLLLDERFELPSVQRFFPPHW 762 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,046,340,610 Number of extensions: 42435926 Number of successful extensions: 92534 Number of sequences better than 1.0e-05: 155 Number of HSP's gapped: 92439 Number of HSP's successfully gapped: 175 Length of query: 786 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 652 Effective length of database: 393,414,312 Effective search space: 256506131424 Effective search space used: 256506131424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)