BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0001.p (555 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244768.1| methyl-accepting chemotaxis protein [Bacillus h... 182 2e-44 ref|NP_693023.1| methyl-accepting chemotaxis protein [Oceanobaci... 158 3e-37 ref|ZP_00098677.1| COG0840: Methyl-accepting chemotaxis protein ... 147 5e-34 ref|NP_655871.1| MA, Methyl-accepting chemotaxis-like domains (c... 145 2e-33 ref|ZP_00097516.1| COG0840: Methyl-accepting chemotaxis protein ... 145 3e-33 >ref|NP_244768.1| methyl-accepting chemotaxis protein [Bacillus halodurans] pir||D84137 methyl-accepting chemotaxis protein BH3900 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07619.1| methyl-accepting chemotaxis protein [Bacillus halodurans] Length = 579 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 117/359 (32%), Positives = 199/359 (55%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 R +V P+ +S + IA G+LT EPL ++DEIG LA FN M +LR II +V + + Sbjct: 221 RMVVKPVVMVSEAAKVIAEGNLTVEPLKVKNRDEIGDLAASFNLMVENLRKIILEVGNNA 280 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 V T++ E + + +G Q++ +E +++ V DMS I +IA Sbjct: 281 EQVAASSEQLTASAEETSKITEQIVSTVQTVTQGVDNQVEKVEYTHKIVGDMSEDIRKIA 340 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 NA T+ ++K+ G+Q +++ Q+ ++++S+ L +II + +SKEI IV Sbjct: 341 ENAKEVSTTSMEASEKSSAGKQVIETLVKQMTLINQSVSGLDEIIKGMRDNSKEINQIVK 400 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 I+ F+VVA VRKLAE+++ SA QI L+S + Sbjct: 401 VITEISDQTNLLALNAAIEAARAGEAGKGFSVVADEVRKLAEQTSLSAKQISNLISNVQK 460 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 + D A ++M+ +TEE+ G L +AG SF I +VS+++ Q Q +S++V+++ Sbjct: 461 ETDQAVQSMETTTEEVVSGMGLADTAGESFEHINQTVSEVTRQIQNVSDSVQKVATGTRQ 520 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 +VE+I + VS +A+G ++A+++EQ+A MEEV +++ L+ +AE+LQ L+ RFKV Sbjct: 521 MVETIDIVNDVSESSAKGMNEVAASTEEQMATMEEVAAASATLAKMAEELQELIGRFKV 579 >ref|NP_693023.1| methyl-accepting chemotaxis protein [Oceanobacillus iheyensis HTE831] dbj|BAC14058.1| methyl-accepting chemotaxis protein [Oceanobacillus iheyensis HTE831] Length = 665 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/359 (30%), Positives = 184/359 (51%), Gaps = 1/359 (0%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 R + P+ L ++ +TI+ GDL+ E L + DE+GTLA+ FN M +L II QV D S Sbjct: 305 RSISKPIYHLVSASDTISHGDLSDEVHL-HRDDELGTLAQSFNKMRENLNGIILQVRDKS 363 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 + A E ++ E+AEG + ++ S + ++M+ I I Sbjct: 364 NHLASSAEQLNASTEQNTSATEQISSSVQEVAEGMSSLNNNITKSSKLAKEMTDSIYTIE 423 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 +++ +T N G ++L++T SQ+ + E+ H LS+ I LG+ S+EI I+ Sbjct: 424 ASSNEVSNTVTNTISAVNEGNKALNTTISQMEFIKENTHQLSNNIEGLGNQSEEISKIID 483 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 I+ FAVVA VRKLAE+S+ SA QI ++S I S Sbjct: 484 VITDISEQTNLLALNATIEAARAGEHGKGFAVVADEVRKLAEKSSQSAEQIKTMISAIQS 543 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 + N +MK +T E+E+G + +A +SFS I V +++Q ++ + + Sbjct: 544 ETANTVSSMKAATTEVEKGINIANNADQSFSNITGYVDSITNQIMNVTTEIEGISTATKQ 603 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 + + ++ + + A +SA++QEQLA+MEE+ +SA L+++AE LQ LVE FK+ Sbjct: 604 FTSLFEGVASIGDTVSHEAENVSASTQEQLASMEEIANSAADLTTVAEDLQQLVENFKL 662 >ref|ZP_00098677.1| COG0840: Methyl-accepting chemotaxis protein [Desulfitobacterium hafniense] Length = 574 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 112/361 (31%), Positives = 182/361 (50%), Gaps = 2/361 (0%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHE-PLLFNS-KDEIGTLARDFNDMALSLRDIITQVND 254 R + +PL+ L+ + N IA G+L + P + + KDEIG L F M ++R++I QV++ Sbjct: 213 RLISTPLSALAKAANEIASGNLVSQFPAKYRTAKDEIGQLGMVFQTMTENIRNLIHQVHE 272 Query: 255 TSMLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITE 314 ++ +V AG A+ A+GA Q+ L + V++M++ I + Sbjct: 273 SAGMVAASSEELSAGAGHAAEAGSQVAHAVSATADGAQVQVTALSETMATVENMAKVIEQ 332 Query: 315 IAGNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENI 374 IA N+ SA A AQ A G +D+ ++ + +S+ + +++ LG+ SKEI+ I Sbjct: 333 IAANSTSATLIAEKAAQAAVQGSSKIDTVVVKMADIKQSVEHSALVVSELGTRSKEIDQI 392 Query: 375 VGTISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLI 434 V TIS F+VVA VRKLAE+S +A QI L+ I Sbjct: 393 VSTISGLAAQTNLLALNAAIEAARAGEEGRGFSVVAEEVRKLAEQSQQAAKQIAVLIQSI 452 Query: 435 ISQMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIA 494 A M T E++ G + AG F++I V S Q +IS V + + + Sbjct: 453 QLDTQRAMTAMTEGTSEVQAGYAAVNEAGGVFADIAALVRTASDQIMEISAGVEGMSMDS 512 Query: 495 GGLVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFK 554 +V S+ K+ +S T++ +SA +QEQ +A+ E+ SS+G L+ LA++LQ V RFK Sbjct: 513 HSMVNSVSKVEEISRQTSDQTQVVSAATQEQSSALTEIASSSGALAQLADQLQQAVSRFK 572 Query: 555 V 555 + Sbjct: 573 I 573 >ref|NP_655871.1| MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer) [Bacillus anthracis A2012] ref|NP_844413.1| methyl-accepting chemotaxis protein [Bacillus anthracis str. Ames] gb|AAP25899.1| methyl-accepting chemotaxis protein [Bacillus anthracis str. Ames] Length = 660 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 139/499 (27%), Positives = 233/499 (46%), Gaps = 54/499 (10%) Query: 76 IFKEAFILSLDGKILAADTSLKKRGYKAGDDFYFTEEDKAMITTMKHSAYSKVYTYQG-- 133 I K+ + LDGK +K G KA D + I H A+S YTY G Sbjct: 197 IGKKGYAFILDGKQKIIAHPQEKSGEKAADSW------AKKIYEDNHGAFS--YTYDGSE 248 Query: 134 ------TSLKTGY---GPIYQDH--DPTKP------IIALMAINFDGPLIQERTLDIIVQ 176 T++KTG+ G +Y + + +P I+ +++ G LI TL I Sbjct: 249 KQMVFATNVKTGWKIGGTMYSNEVIEAAQPVFYNMLIVMFISLVIGGALIYFVTLSI--- 305 Query: 177 PFXXXXXXXXXXXXXXXXXXRRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLAR 236 PL +L A+ I+ GDLT + + +S DEIG LA+ Sbjct: 306 -----------------------TKPLKRLVATSKEISEGDLT-QTIDIHSNDEIGQLAK 341 Query: 237 DFNDMALSLRDIITQVNDTSMLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLK 296 FN+M +LR +I ++N ++ V + A E E++ GA TQ Sbjct: 342 GFNEMTDALRTLIGRINTSAGHVAAASEELTASVRQASEATEQITMAMDEISSGATTQTT 401 Query: 297 DLEGSYQAVQDMSRFITEIAGNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHD 356 +E + D++ I +A ++ S +A+ +KA G + + T +Q+ ++ES+ Sbjct: 402 SVENGAMLLFDVTEGIQHVANSSSSINTASAHTREKAEDGGKLVGKTVNQMQSIAESVSQ 461 Query: 357 LSDIIATLGSHSKEIENIVGTISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKL 416 ++I L + SK+I +I+ I + FA+VA VRKL Sbjct: 462 SDEVIQLLNNKSKQIGDILEVIQNIADQTNLLALNAAIEAARAGEHGRGFAIVADEVRKL 521 Query: 417 AERSAASAGQIGELVSLIISQMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDM 476 AE+S+ S+ +I +L+ I M ++M EE++ G + ++F+EI S +++ Sbjct: 522 AEKSSVSSSEISKLICEIQDDMSKTVKSMGHVNEEVQSGLVIANETKQNFTEILQSTNEI 581 Query: 477 SSQSQQISETVRELGLIAGGLVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSA 536 + Q + + ET + A + S+ +I + A ++A+++EQLA+MEE+ S+A Sbjct: 582 ADQIKTMVETANGMSKGANEVSISVGQIAMTAQNNATSTQNVAASAEEQLASMEEIGSAA 641 Query: 537 GFLSSLAEKLQVLVERFKV 555 G LS +AE+LQVL+ERFKV Sbjct: 642 GTLSQMAEELQVLIERFKV 660 >ref|ZP_00097516.1| COG0840: Methyl-accepting chemotaxis protein [Desulfitobacterium hafniense] Length = 571 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 106/359 (29%), Positives = 187/359 (52%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 R + +PL +L +V IA+G+L + S+DE+G LA +FN M +LR ++ + TS Sbjct: 213 RMIANPLAQLVGTVREIAQGNLAVRRMDLISQDEVGQLAAEFNTMTDNLRVLVKNIAYTS 272 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 V + A A ++A GA Q ++ + V+ MS + EIA Sbjct: 273 EQVAASSEELTASAEQSASATNQIAATITDVAAGATRQEAAIDDTASIVEQMSAGVQEIA 332 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 NA++ +A A A G +++++ SQ+ + ++ + ++ LG SKEI IV Sbjct: 333 ANANTVSRSAEMTATAAGQGDKAVEAAVSQMKNIEITVAGTAQVVRQLGERSKEIGQIVD 392 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 IS FAVVA VRKLAE+S +A +I L++ I Sbjct: 393 AISGIAAQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSQEAAKEIAGLIAEIQQ 452 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 + +A M T E++ G E++ SAG++F EI + ++S+Q ++IS ++++ + Sbjct: 453 ETGSAVNAMHDGTREVKVGSEVVNSAGQAFKEIVNLIGEVSTQVREISAAIQQMASGSQQ 512 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 +V+SI+ I +SN + T+SA ++EQ A+ME++ +S+ L+ +A++LQ + +F+V Sbjct: 513 IVDSIRDIEHISNEASSQTQTVSAATEEQSASMEQIAASSQALAKMADELQNSIGKFRV 571 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.128 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 594,022,630 Number of extensions: 20101896 Number of successful extensions: 62400 Number of sequences better than 1.0e-05: 1263 Number of HSP's gapped: 59796 Number of HSP's successfully gapped: 1270 Length of query: 555 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 424 Effective length of database: 401,559,609 Effective search space: 170261274216 Effective search space used: 170261274216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)