BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0006.p (781 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241367.1| ribonucleoside-diphosphate reductase alpha subu... 868 0.0 ref|NP_694011.1| ribonucleoside-diphosphate reductase alpha subu... 840 0.0 ref|NP_465679.1| similar to ribonucleoside-diphosphate reductase... 827 0.0 ref|NP_471591.1| similar to ribonucleoside-diphosphate reductase... 826 0.0 ref|NP_639325.1| ribonucleoside-diphosphate reductase alpha chai... 812 0.0 >ref|NP_241367.1| ribonucleoside-diphosphate reductase alpha subunit [Bacillus halodurans] pir||E83712 ribonucleoside-diphosphate reductase alpha subunit nrdA [imported] - Bacillus halodurans (strain C-125) dbj|BAB04220.1| ribonucleoside-diphosphate reductase alpha subunit [Bacillus halodurans] Length = 726 Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/718 (58%), Positives = 523/718 (72%), Gaps = 27/718 (3%) Query: 64 AFTMSALELVTKEEPDWKFAAARSLLTSLYKKAAVNRRYKAYPDEPYGELYPLITDLVKK 123 + M A++ ++ E+P+W F AR L LY R +PY + Y LI LV K Sbjct: 36 SMRMKAMDEISAEQPEWTFITARIYLEELYNSVKEQRGLA----KPYTQFYELIEVLVDK 91 Query: 124 GIYREELLSHYTKEQIEELGGCIDYTRDLLFDYIGLLTLSDRYLAHDFDGRVMELPQERY 183 GIY ++LL+ YTKE+I ELG ++ +D LF YIGL TL+DRYLA +D +MELPQER+ Sbjct: 92 GIYEKDLLNRYTKEEINELGEHLNQEKDELFTYIGLKTLADRYLARLYDRTLMELPQERF 151 Query: 184 MIIAMFLMHTEPEEKRLELVKEAYWAMSNIYMTAATPTMSNAGKKVAGQLSSCFIDTVDD 243 M+IAM LM E +RL LVKEAYWA+SN+YMT ATPT +NAGK V GQLSSCFIDTVDD Sbjct: 152 MVIAMSLMKKEVNSQRLSLVKEAYWALSNLYMTVATPTFANAGKAV-GQLSSCFIDTVDD 210 Query: 244 SLEGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSV 303 SL GIFDS TD A +SK GGG+G+YLGK+RA+GS I+ ++N SSGV+PW++QLNN AVSV Sbjct: 211 SLRGIFDSCTDAATVSKSGGGLGIYLGKIRAKGSSIKNYQNVSSGVLPWMKQLNNVAVSV 270 Query: 304 DQLGTRKGAVAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEARGH 363 DQLG R+GA+AVYLD++HKDI +FLD KLNNGDER R HD+F V LPDLFMEAVEAR + Sbjct: 271 DQLGQRQGAIAVYLDIWHKDIFSFLDAKLNNGDERQRTHDLFTAVSLPDLFMEAVEARDN 330 Query: 364 WNLFCPHEVKKVMGWKDAKGRALGLEDFYDEQLGQGSFREKYAEATANLELSRITVPAID 423 W LF PHE+++ MG LED YDEQ G G+FRE+Y N +LSR VPAI+ Sbjct: 331 WYLFDPHEIRQKMG--------FSLEDSYDEQKGSGTFRERYEACVNNPDLSRTEVPAIE 382 Query: 424 IMKRIMKSQLETGTPYMFYRDTVNRSNPNRHQGMVFSSNLCTEIMQNQSATVIESEELVT 483 IMKRIM SQLETG+P+M+YRD NR NPN+H+GMV+ SNLCTEI+QN S T + E+ T Sbjct: 383 IMKRIMISQLETGSPFMYYRDEANRMNPNKHEGMVYGSNLCTEIIQNMSPTTVVEEK--T 440 Query: 484 KDGQTRIVISKVPGDFVVCNLNSIHLARAIPAGVLERLVPIQVRMLDNVIDINNIEVLQA 543 +DG +I+I+K PGD+VVCNL+S+ LAR + VLERL+PIQVRMLDNVID+N IEV QA Sbjct: 441 EDG--KILITKQPGDYVVCNLSSLSLARVVEDDVLERLIPIQVRMLDNVIDVNRIEVKQA 498 Query: 544 QYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVEYNNHLYEHINYLVVRSSMELAREKG 603 + TN +YRA+GLGT+G HHLLA +GI WES+EA+ Y + LYE INYL +++SM+LA EKG Sbjct: 499 EQTNQKYRAIGLGTYGWHHLLAKKGIAWESEEAIRYADELYETINYLTIQASMKLAEEKG 558 Query: 604 RYPKFAGSDWETGAYFTSRGYTSGEQEGKYVTTEQWRELQEQVAADGVRNAWMFAIAPNX 663 YP F GSDWETG YF R Y TT++W EL EQV G+RN ++ A+APN Sbjct: 559 AYPMFGGSDWETGEYFERRQY----------TTDKWTELAEQVKEKGLRNGYLLAVAPNA 608 Query: 664 XXXXXXXXXXXXDPLYELLSYEEKTTYKIANPAPDLSEKTIWYYKTAFLIDQNWSIRMAS 723 DP+++ EEK Y+I APDLS +T WYYK+A+ IDQ WSIR Sbjct: 609 TTALIGGTTASIDPIFQKTYVEEKKNYRIPVTAPDLSPETTWYYKSAYHIDQTWSIRQNG 668 Query: 724 ARQRHVDQGQSFNLYVTPDIKATDFLNLHLNAWKGGLKSTYYVRSRALTIEECESCAS 781 ARQRHVDQ SFNLYV+ I+A + L LHL AWK GLK+TYY+RS ++ IE+CESCAS Sbjct: 669 ARQRHVDQSISFNLYVSNTIRAKELLELHLLAWKEGLKTTYYLRSTSMEIEDCESCAS 726 >ref|NP_694011.1| ribonucleoside-diphosphate reductase alpha subunit [Oceanobacillus iheyensis HTE831] dbj|BAC15045.1| ribonucleoside-diphosphate reductase alpha subunit [Oceanobacillus iheyensis HTE831] Length = 744 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/726 (56%), Positives = 519/726 (71%), Gaps = 26/726 (3%) Query: 57 SGEEISNAFTMSALELVTKEEPDWKFAAARSLLTSLYKKAAVNRRYKAYPDEPYGELYPL 116 S ++ +A ALE + + P+W FAAAR + LY++A+ NR Y YG Y L Sbjct: 44 SEAKLEDALINVALENMDEATPNWGFAAARIYVEKLYREASNNR---GYTQGSYGSFYAL 100 Query: 117 ITDLVKKGIYREELLSHYTKEQIEELGGCIDYTRDLLFDYIGLLTLSDRYLAHDFDGRVM 176 + L +KGIY LL YTKE IEE G I RD LF+Y+G+ T++ RYLA D + V Sbjct: 101 LEQLTEKGIYTPALLQKYTKEDIEEFGKAIQPERDQLFNYLGIYTVATRYLATDHEKNVY 160 Query: 177 ELPQERYMIIAMFLMHTEPEEKRLELVKEAYWAMSNIYMTAATPTMSNAGKKVAGQLSSC 236 ELPQER+M+IAM +M EP ++R E V EAYWA+SN+YMT ATPT++NAGK GQLSSC Sbjct: 161 ELPQERWMVIAMHIMQDEPADQRQENVLEAYWALSNLYMTVATPTLTNAGK-THGQLSSC 219 Query: 237 FIDTVDDSLEGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQL 296 FIDTVDDSL+ I+DSN+D+A+LSK GGGIGVY+GK+RARGS I+G K SSGV+PWI+QL Sbjct: 220 FIDTVDDSLQSIYDSNSDIAKLSKNGGGIGVYMGKIRARGSSIKGFKGMSSGVVPWIKQL 279 Query: 297 NNTAVSVDQLGTRKGAVAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFME 356 NNTAVSVDQLGTRKGA+A+YLDV+H+DI +FLDLKLNNGD+RMRAHD+F GVCLPD FME Sbjct: 280 NNTAVSVDQLGTRKGAIAIYLDVWHQDIESFLDLKLNNGDDRMRAHDIFTGVCLPDYFME 339 Query: 357 AVEARGHWNLFCPHEVKKVMGWKDAKGRALGLEDFYDEQLGQGSFREKYAEATANLELSR 416 VE RG W LF PHEV++VMG+ LEDFYDEQ G GSFR +Y E AN LS+ Sbjct: 340 QVENRGDWYLFDPHEVRQVMGY--------SLEDFYDEQKGSGSFRTRYEECIANEALSK 391 Query: 417 ITVPAIDIMKRIMKSQLETGTPYMFYRDTVNRSNPNRHQGMVFSSNLCTEIMQNQSATVI 476 VPAI+IMKR+MKSQLE+GTP+MFYRD VNR N N H+G+++ SNLCTEI QNQS T Sbjct: 392 RKVPAIEIMKRLMKSQLESGTPFMFYRDEVNRQNANAHEGLIYCSNLCTEITQNQSPTEF 451 Query: 477 ESEELVTKDGQTRIVISKVPGDFVVCNLNSIHLARAIPAGVLERLVPIQVRMLDNVIDIN 536 E L + + IV GD+VVCNL+S++L RA+ VLERL+PIQVRMLDNVIDIN Sbjct: 452 VEEFL---ENENTIVKKFKSGDYVVCNLSSVNLGRAVKNDVLERLIPIQVRMLDNVIDIN 508 Query: 537 NIEVLQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVEYNNHLYEHINYLVVRSSM 596 + + QA+ TN +YRA+GLGTFG HHLLAL+GI WESDEAV Y + LYE I YL ++SSM Sbjct: 509 TLPIKQAEITNRKYRAIGLGTFGWHHLLALKGIAWESDEAVAYADELYEKIAYLTIQSSM 568 Query: 597 ELAREKGRYPKFAGSDWETGAYFTSRGYTSGEQEGKYVTTEQWRELQEQVAADGVRNAWM 656 EL++EKG YP + GS W+TG YF +GYT +W EL+ +V G+RN ++ Sbjct: 569 ELSKEKGHYPVYEGSKWQTGEYFDQKGYTGN----------KWDELKAEVKQHGMRNGYL 618 Query: 657 FAIAPNXXXXXXXXXXXXXDPLYELLSYEEKTTYKIANPAPDLSEKTI-WYYKTAFLIDQ 715 A+APN DP++++ YEEK +KI AP+L T Y ++A+++DQ Sbjct: 619 MAVAPNSTTAMIAGSTASIDPIFQVFYYEEKKDFKIPVTAPELDHHTYNVYRRSAYIVDQ 678 Query: 716 NWSIRMASARQRHVDQGQSFNLYVTPDIKATDFLNLHLNAWKGGLKSTYYVRSRALTIEE 775 +S++ + RQ+H+DQ SFN YV IKA+ L+LH AW+ GLK+TYYVRS + IEE Sbjct: 679 RFSVKQNAKRQKHIDQSISFNFYVPNTIKASVLLDLHTQAWREGLKTTYYVRSTSNDIEE 738 Query: 776 CESCAS 781 CE C+S Sbjct: 739 CEWCSS 744 >ref|NP_465679.1| similar to ribonucleoside-diphosphate reductase, subunit alpha [Listeria monocytogenes EGD-e] pir||AC1344 ribonucleoside-diphosphate reductase, chain alpha homolog lmo2155 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00233.1| lmo2155 [Listeria monocytogenes] Length = 763 Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/783 (54%), Positives = 539/783 (68%), Gaps = 29/783 (3%) Query: 3 ELMPQLVVKPDNRQLAFDEIRLSVYADRILKGLDHLSKETLLRGVQSKL-RREEVSGEEI 61 ++ +V NR+L FD+ RL Y ++I + L E R V + + ++E+ + +E+ Sbjct: 6 QMTTYIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADEL 65 Query: 62 SNAFTMSALELVTKEEPDWKFAAARSLLTSLYKKAAVNRRYKAYPDEPYGELYPLITDLV 121 + A P+W+ AAR L LYKKA+ NR Y D+ YG L L Sbjct: 66 VDYLIREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYN--DDDKYGSYVGLQESLG 123 Query: 122 KKGIYREELLSHYTKEQIEELGGCIDYTRDLLFDYIGLLTLSDRYLAHDFDGRVMELPQE 181 ++GIY +L +Y+KE + G ID +D LF Y GL L+ RYLA D + V ELPQE Sbjct: 124 ERGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQE 183 Query: 182 RYMIIAMFLMHTEPEEKRLELVKEAYWAMSNIYMTAATPTMSNAGKKVAGQLSSCFIDTV 241 R++ IA++LM EP+EKR++LV+EAYWA+SN+YMT ATPT++NAGK V GQLSSCFIDTV Sbjct: 184 RWLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGK-VGGQLSSCFIDTV 242 Query: 242 DDSLEGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAV 301 DDSL+GI+DSNTDVAR+SK GGG+G YLG VR+ G+ IRG K S GVIPWI+QLNNTAV Sbjct: 243 DDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAV 302 Query: 302 SVDQLGTRKGAVAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAR 361 SVDQLG RKGA+AVYLDVFHKDI +FLDL+LNNGD+R+RAHDVF VC+PD+FMEAVE R Sbjct: 303 SVDQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERR 362 Query: 362 GHWNLFCPHEVKKVMGWKDAKGRALGLEDFYDEQLGQGSFREKYAEATANLELSRITVPA 421 G W LF PHEVK GW L+DFYDE G+G+FREKY E A+ +S+ V A Sbjct: 363 GEWYLFDPHEVKAKKGWY--------LQDFYDESKGEGTFREKYEELVADETISKKIVKA 414 Query: 422 IDIMKRIMKSQLETGTPYMFYRDTVNRSNPNRHQGMVFSSNLCTEIMQNQSATVIESEEL 481 IDIMKRIM SQLETG P+MFYRD VNR NPN+H+GMV+SSNLCTEIMQN S T + +E+ Sbjct: 415 IDIMKRIMMSQLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKM-IQEI 473 Query: 482 VTKDGQTRIVISKVPGDFVVCNLNSIHLARAIPA--GVLERLVPIQVRMLDNVIDINNIE 539 ++ D +IVI+K GDFVVCNL+S++L RA+ A G LERL+ ++VRMLDNVID+N + Sbjct: 474 ISGD---QIVITKQAGDFVVCNLSSVNLGRAVVAEEGTLERLIEVEVRMLDNVIDLNELP 530 Query: 540 VLQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVEYNNHLYEHINYLVVRSSMELA 599 V QA TN +YR++GLGTFG HHLLAL+ I W+S+EA +Y + LYE INYL +R+S +LA Sbjct: 531 VPQATITNQKYRSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLA 590 Query: 600 REKGRYPKFAGSDWETGAYFTSRGYTSGEQEGKYVTTEQWRELQEQVAADGVRNAWMFAI 659 +EKG Y F GSDW TG YF R Y S E W+EL ++VA G+RNA++ A+ Sbjct: 591 QEKGAYKVFKGSDWNTGEYFARRNYNSPE----------WQELAKEVAEKGLRNAYLVAV 640 Query: 660 APNXXXXXXXXXXXXXDPLYELLSYEEKTTYKIANPAPDLSEKTIWYY-KTAFLIDQNWS 718 APN DP+Y YEEK Y+ APDL+ T YY K A+ +DQ S Sbjct: 641 APNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDLNLSTYPYYEKGAYKVDQFAS 700 Query: 719 IRMASARQRHVDQGQSFNLYVTPDIKATDFLNLHLNAWKGGLKSTYYVRSRALTIEECES 778 +R RQRHVDQ SFN YV IKA+ L LH+ AW GLK+TYYVRS + +EECE Sbjct: 701 VRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSNDIDVEECEW 760 Query: 779 CAS 781 C+S Sbjct: 761 CSS 763 >ref|NP_471591.1| similar to ribonucleoside-diphosphate reductase, subunit alpha [Listeria innocua] pir||AG1714 ribonucleoside-diphosphate reductase, chain alpha homolog lin2259 [imported] - Listeria innocua (strain Clip11262) emb|CAC97487.1| lin2259 [Listeria innocua] Length = 763 Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/783 (54%), Positives = 539/783 (68%), Gaps = 29/783 (3%) Query: 3 ELMPQLVVKPDNRQLAFDEIRLSVYADRILKGLDHLSKETLLRGVQSKL-RREEVSGEEI 61 ++ +V NR+L FD+ RL Y ++I + L E R V + + ++E+ + +E+ Sbjct: 6 QMTTYIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADEL 65 Query: 62 SNAFTMSALELVTKEEPDWKFAAARSLLTSLYKKAAVNRRYKAYPDEPYGELYPLITDLV 121 + A P+W+ AAR L LYKKA+ NR Y D+ YG L L Sbjct: 66 VDYLIREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYN--DDDKYGSYVGLQESLG 123 Query: 122 KKGIYREELLSHYTKEQIEELGGCIDYTRDLLFDYIGLLTLSDRYLAHDFDGRVMELPQE 181 ++GIY +L +Y+KE + G ID +D LF Y GL L+ RYLA D + V ELPQE Sbjct: 124 ERGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQE 183 Query: 182 RYMIIAMFLMHTEPEEKRLELVKEAYWAMSNIYMTAATPTMSNAGKKVAGQLSSCFIDTV 241 R++ IA++LM EP+EKR++LV+EAYWA+SN+YMT ATPT++NAGK V GQLSSCFIDTV Sbjct: 184 RWLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGK-VGGQLSSCFIDTV 242 Query: 242 DDSLEGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAV 301 DDSL+GI+DSNTDVAR+SK GGG+G YLG VR+ G+ IRG K S GVIPWI+QLNNTAV Sbjct: 243 DDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAV 302 Query: 302 SVDQLGTRKGAVAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAR 361 SVDQLG RKGA+AVYLDVFHKDI +FLDL+LNNGD+R+RAHDVF VC+PD+FMEAVE R Sbjct: 303 SVDQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERR 362 Query: 362 GHWNLFCPHEVKKVMGWKDAKGRALGLEDFYDEQLGQGSFREKYAEATANLELSRITVPA 421 G W LF PHEVK GW L+DFYDE G+G+FREKY E A+ +S+ V A Sbjct: 363 GEWYLFDPHEVKAKKGWY--------LQDFYDESKGEGTFREKYDELVADETISKKIVKA 414 Query: 422 IDIMKRIMKSQLETGTPYMFYRDTVNRSNPNRHQGMVFSSNLCTEIMQNQSATVIESEEL 481 IDIMKR+M SQLETG P+MFYRD VNR NPN+H+GMV+SSNLCTEIMQN S T + +E+ Sbjct: 415 IDIMKRVMMSQLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKM-IQEI 473 Query: 482 VTKDGQTRIVISKVPGDFVVCNLNSIHLARAIPA--GVLERLVPIQVRMLDNVIDINNIE 539 ++ D +IVI+K GDFVVCNL+S++L RA+ A G LERL+ ++VRMLDNVID+N + Sbjct: 474 ISGD---QIVITKQAGDFVVCNLSSVNLGRAVVAEEGTLERLIEVEVRMLDNVIDLNELP 530 Query: 540 VLQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVEYNNHLYEHINYLVVRSSMELA 599 V QA TN +YR++GLGTFG HHLLAL+ I W+S+EA +Y + LYE INYL +R+S +LA Sbjct: 531 VPQATITNQKYRSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLA 590 Query: 600 REKGRYPKFAGSDWETGAYFTSRGYTSGEQEGKYVTTEQWRELQEQVAADGVRNAWMFAI 659 +EKG Y F GSDW TG YF R Y S E W+EL ++VA G+RNA++ A+ Sbjct: 591 QEKGAYKVFKGSDWNTGEYFARRNYNSPE----------WQELAKEVAEKGLRNAYLVAV 640 Query: 660 APNXXXXXXXXXXXXXDPLYELLSYEEKTTYKIANPAPDLSEKTIWYY-KTAFLIDQNWS 718 APN DP+Y YEEK Y+ APDL+ T YY K A+ +DQ S Sbjct: 641 APNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDLNLSTYPYYEKGAYKVDQFAS 700 Query: 719 IRMASARQRHVDQGQSFNLYVTPDIKATDFLNLHLNAWKGGLKSTYYVRSRALTIEECES 778 +R RQRHVDQ SFN YV IKA+ L LH+ AW GLK+TYYVRS + +EECE Sbjct: 701 VRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSNDIDVEECEW 760 Query: 779 CAS 781 C+S Sbjct: 761 CSS 763 >ref|NP_639325.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM43207.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 827 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/783 (53%), Positives = 529/783 (67%), Gaps = 40/783 (5%) Query: 14 NRQLAFDEIRLSVYADRILKGLDHLSKETLLRGVQSKL-RREEVSGEEISNAFTMSALEL 72 NR++ F+ RL D+I L R V + R++ V+ +++ + A Sbjct: 70 NRKIPFEPARLERAIDQIHAEFPQLDVGDYKRSVFGFVERKDSVNADDLVDHLIREAEAR 129 Query: 73 VTKEEPDWKFAAARSLLTSLYKKAAVNRRYKAYPDEPYGELYPLITDLVKKGIYREELLS 132 V P+W+ AAR L LYK+A+ NR Y A + YG L L + +Y ++L Sbjct: 130 VDLTTPEWEHFAARLYLRRLYKRASRNRFYDA--GQKYGSFVGLQESLADRNVYSNDILK 187 Query: 133 HYTKEQIEELGGCIDYTRDLLFDYIGLLTLSDRYLAHDFDGRVMELPQERYMIIAMFLMH 192 Y+KE++ E G I RD LF Y GL L+ RYLA D V ELPQER++ IA++LM Sbjct: 188 SYSKEELIEAGKMIAPERDTLFAYNGLYLLATRYLATDNSRGVFELPQERWLTIALYLMQ 247 Query: 193 TE-PEEKRLELVKEAYWAMSNIYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDS 251 E P E+R++LV EAYWA+SN+YMT ATPT++NAGK V GQLSSCFIDTVDDSL+GI+DS Sbjct: 248 DEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGK-VGGQLSSCFIDTVDDSLQGIYDS 306 Query: 252 NTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKG 311 NTDVAR+SK GGG+G YLG VR+ GS IRG N+S GV+PWI+QLNNTAVSVDQLG RKG Sbjct: 307 NTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKG 366 Query: 312 AVAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEARGHWNLFCPHE 371 A+AVYLD+FH+DI +FLDL+LNNGD+R+RAHDVF VC+PDLFMEAVE RG W LF PHE Sbjct: 367 AIAVYLDIFHRDIESFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHE 426 Query: 372 VKKVMGWKDAKGRALGLEDFYDEQLGQG--SFREKYAEATANLELSRITVPAIDIMKRIM 429 VK++ GW L+DFYDE+ G SFR+KY E A+ ++R TV AI+I KRIM Sbjct: 427 VKRIKGWY--------LQDFYDEKKGDANSSFRKKYEEVVADERITRKTVKAIEIFKRIM 478 Query: 430 KSQLETGTPYMFYRDTVNRSNPNRHQGMVFSSNLCTEIMQNQSATVIESEELVTKDGQTR 489 SQLETG P+MFYRD VNR NPN+H+GMV+SSNLCTEI+QN S T + +E+++ + + Sbjct: 479 VSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRM-MQEIISGN---Q 534 Query: 490 IVISKVPGDFVVCNLNSIHLARAIP----------AGVLERLVPIQVRMLDNVIDINNIE 539 IV +K GDFVVCNL+SI+L RAI A VLERL+PIQVRMLDNVID+N + Sbjct: 535 IVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLP 594 Query: 540 VLQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVEYNNHLYEHINYLVVRSSMELA 599 V QA TN +YRA+GLGTFG HHLLA + I W + EA +Y++ LYE INYL V++SMELA Sbjct: 595 VPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELYERINYLTVQASMELA 654 Query: 600 REKGRYPKFAGSDWETGAYFTSRGYTSGEQEGKYVTTEQWRELQEQVAADGVRNAWMFAI 659 +EKG Y F GSDW TG YF +R Y S QW EL QVA +GVRNAWM A+ Sbjct: 655 KEKGTYSVFRGSDWHTGEYFRARDYNS----------PQWLELSAQVAVNGVRNAWMLAV 704 Query: 660 APNXXXXXXXXXXXXXDPLYELLSYEEKTTYKIANPAPDLSEKTIWYY-KTAFLIDQNWS 718 APN DP+Y YEEK ++ AP LS T YY K A+ +DQ S Sbjct: 705 APNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLDTWPYYEKGAYKVDQFAS 764 Query: 719 IRMASARQRHVDQGQSFNLYVTPDIKATDFLNLHLNAWKGGLKSTYYVRSRALTIEECES 778 +R + RQRH+DQ SFN YV I+A+ L+LH+ AW+ GLK+TYYVRS + I ECE Sbjct: 765 VRQNARRQRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSNDIDISECEW 824 Query: 779 CAS 781 C+S Sbjct: 825 CSS 827 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,124,591,233 Number of extensions: 46413516 Number of successful extensions: 113868 Number of sequences better than 1.0e-05: 1135 Number of HSP's gapped: 111015 Number of HSP's successfully gapped: 1319 Length of query: 781 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 647 Effective length of database: 393,414,312 Effective search space: 254539059864 Effective search space used: 254539059864 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)