BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0009.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00099365.1| COG0500: SAM-dependent methyltransferases [De... 167 1e-40 ref|NP_220718.1| unknown [Rickettsia prowazekii] >gi|7467716|pir... 84 2e-15 ref|NP_953297.1| conserved hypothetical protein [Geobacter sulfu... 76 4e-13 gb|EAB43699.1| unknown [environmental sequence] 72 9e-12 >ref|ZP_00099365.1| COG0500: SAM-dependent methyltransferases [Desulfitobacterium hafniense] Length = 192 Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 116/182 (63%), Gaps = 1/182 (0%) Query: 8 KDFLPVLLEHLKFAETILDVGSGTGTLLERYEASVVIGLDIHRPYLLHRKYTASHIIPVH 67 K+FL ++ E +K A+++LD+G G G L+ + + IG+D H PYL + A+ +P+ Sbjct: 9 KNFLGMIKELMKDAQSVLDIGCGVGATLKDFPCPIKIGVDAHGPYL-EKARLATSFLPIK 67 Query: 68 ADARHIDKLFLPGTFSAVTLIDSLEHFTMSEGKELLRKAEVIAAGRVVVFTPRGFFPQEG 127 +A+ I ++FL + V++ID +EH G E+L +AE IA RV+VFTPRGFF Q+ Sbjct: 68 YEAQRIGEIFLAKSVDCVSMIDVIEHMEKGVGYEVLAQAERIAVKRVIVFTPRGFFKQKA 127 Query: 128 TDHYHLQGEYYQKHRSGWEPEDFLGLGYAVTVLKDFHHAENPSFREAFGPNHAPLDALLA 187 DHY L GE +Q+HRSGWE EDF GY V V FH N +F E++G + P+DALLA Sbjct: 128 EDHYGLGGESFQEHRSGWEIEDFTQRGYQVIVFNQFHDQSNLAFVESYGKDAKPMDALLA 187 Query: 188 CK 189 K Sbjct: 188 WK 189 >ref|NP_220718.1| unknown [Rickettsia prowazekii] pir||A71690 hypothetical protein RP335 - Rickettsia prowazekii emb|CAA14795.1| unknown [Rickettsia prowazekii] Length = 373 Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 19/171 (11%) Query: 5 IKVKDFL-PVLLEHLKFAETILDVGSGTGTLLERYEA-SVVIGLDIHRPY--LLHRKYTA 60 IK+K+F+ PV +I+D+G G ++Y +++I ++ ++ Y +L R + Sbjct: 19 IKIKEFISPVY--------SIMDIGCGIRP--QQYIVPNLLICVEPYKEYTEILKRNLSG 68 Query: 61 SHIIPVHADARHIDKLFLPGTFSAVTLIDSLEHFTMSEGKELLRKAEVIAAGRVVVFTPR 120 ++ I + DA+ + + ++ LID +EH GKE+L K IA ++++FTP Sbjct: 69 TNSIIIPLDAKSALSILPDKSIDSIFLIDVIEHIPKEIGKEILIKCTRIARRQIIIFTPL 128 Query: 121 GFFPQE--GTDHYHLQGEYYQKHRSGWEPEDFLGLGYAVTVLKDFH-HAEN 168 GF PQE D ++L G +Q+H+SGW PEDF G+ + K+ H H N Sbjct: 129 GFMPQEVHEIDGWNLHGGAWQEHKSGWYPEDF--PGWNIIGCKELHTHNSN 177 >ref|NP_953297.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gb|AAR35624.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] Length = 226 Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 17/195 (8%) Query: 5 IKVKDFLPVLLEHLKFAETILDVGSGTGTLLERYEASVV-IGLDIHRPYLLH-----RKY 58 ++ P ++ L+ ++D+G G +++ +V I + Y+ H ++ Sbjct: 6 VEAGKLFPEAIKKLQHVRVLMDIGCGIRP--QQFLRPLVHICCEPFGQYVEHLQTLIKER 63 Query: 59 TASHIIPVHADARHIDKLFLPGTFSAVTLIDSLEHFTMSEGKELLRKAEVIAAGRVVVFT 118 T + + ++A +LF P + V L D +EH E LLR E IA ++ +FT Sbjct: 64 TDRNYVVINATWAETVRLFPPKSVDTVILNDVIEHLEKEEAVNLLRATERIARRQIALFT 123 Query: 119 PRGFFPQ---EGTDHYHLQGEYYQKHRSGWEPEDFLGLGYAVTVLKDFHHAENPSFREAF 175 P GF PQ +G D + L G +Q+H+SGW+P+DF + + + FH +++ Sbjct: 124 PLGFMPQSHPDGKDAWGLDGGAWQEHKSGWQPDDF-DETWDIVAAEVFHKSDSMG----- 177 Query: 176 GPNHAPLDALLACKT 190 P AL A KT Sbjct: 178 NELEKPFGALWAIKT 192 >gb|EAB43699.1| unknown [environmental sequence] Length = 201 Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 11 LPVLLEHLKFAETILDVGSGTGTLLERYEASV--VIGLDIHRPYLLHRKYTASHIIPVHA 68 + VL + LK +++LD+G G + L+ Y ++ IG++ +PY+ + H + Sbjct: 21 VSVLKKELKDCQSVLDLGCGPDSPLQ-YCKNIKHSIGVEAFQPYVDESQKKGIHNEYIKK 79 Query: 69 DARHIDKLFLPGTFSAVTLIDSLEHFTMSEGKELLRKAEVIAAGRVVVFTPRGFFPQEGT 128 + I+ F +F AV L++ +EH + G E+L+K E A +V++ TP GFFPQ+ Sbjct: 80 NIGEIE--FEENSFDAVILMEVIEHMEENVGLEVLKKIEFWARKKVIISTPNGFFPQKIV 137 Query: 129 DHYHLQGEYYQKHRSGWEPEDFLGLGYA 156 D +Q H SGW+ + LG++ Sbjct: 138 DKNPMQV-----HLSGWDTKKMESLGFS 160 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 305,774,193 Number of extensions: 13018903 Number of successful extensions: 25511 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 25508 Number of HSP's successfully gapped: 4 Length of query: 191 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 72 Effective length of database: 434,140,797 Effective search space: 31258137384 Effective search space used: 31258137384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)