BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0005.p
         (372 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_388796.1| similar to hypothetical proteins [Bacillus subt...    74   7e-12
ref|NP_692026.1| hypothetical protein OB1105 [Oceanobacillus ihe...    67   5e-10

>ref|NP_388796.1| similar to hypothetical proteins [Bacillus subtilis]
 sp|P54598|YHCN_BACSU Lipoprotein yhcN precursor
 pir||B69823 conserved hypothetical protein yhcN - Bacillus subtilis
 emb|CAA65698.1| hypothetical protein [Bacillus subtilis]
 emb|CAB12743.1| yhcN [Bacillus subtilis subsp. subtilis str. 168]
          Length = 189

 Score = 73.6 bits (179), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 304 VTRDMKDKIAAEVKKYDKNIDNVYVSANPDFVDRANFYAQEFRAGHPLRGFAREFGTMVQ 363
           V  ++K KIA +V+  DKNIDNVYVSANPDFV+R   Y +  + G P+ G   EF   VQ
Sbjct: 123 VENNLKKKIAKKVRSTDKNIDNVYVSANPDFVERMQGYGKRIQNGDPIAGLFDEFTQTVQ 182

Query: 364 RIFP 367
           R+FP
Sbjct: 183 RVFP 186


>ref|NP_692026.1| hypothetical protein OB1105 [Oceanobacillus iheyensis HTE831]
 dbj|BAC13061.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 188

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 44/66 (66%)

Query: 302 DTVTRDMKDKIAAEVKKYDKNIDNVYVSANPDFVDRANFYAQEFRAGHPLRGFAREFGTM 361
           D V+ +MK++IA  V+  D +I+NVYV+ NPDF+D  + Y  +   G P+ GF  + G M
Sbjct: 120 DNVSDEMKEQIANIVRSVDNSIENVYVTTNPDFMDLTDRYMNDVDEGRPVEGFFDQIGNM 179

Query: 362 VQRIFP 367
           ++R+FP
Sbjct: 180 IERVFP 185


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 520,767,181
Number of extensions: 22568418
Number of successful extensions: 126213
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 126958
Number of HSP's successfully gapped: 33
Length of query: 372
Length of database: 757,237,578
Length adjustment: 127
Effective length of query: 245
Effective length of database: 412,420,005
Effective search space: 101042901225
Effective search space used: 101042901225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)