BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0010.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183401.1| hypothetical protein Exigu117701 [Exiguobacte... 244 2e-63 sp|P37730|AMYD_THETU Potential starch degradation products trans... 243 6e-63 ref|NP_693490.1| multiple sugar-binding transport system permeas... 241 2e-62 ref|ZP_00069191.1| COG1175: ABC-type sugar transport systems, pe... 198 2e-49 ref|ZP_00121314.1| hypothetical protein [Bifidobacterium longum ... 188 2e-46 >ref|ZP_00183401.1| hypothetical protein Exigu117701 [Exiguobacterium sp. 255-15] Length = 182 Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 116/182 (63%), Positives = 147/182 (80%) Query: 140 MPNVIGGILLGYIWQFIFTKGFATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQTAGY 199 MPN+IGG++LG++WQFI+ KGFA+IGE+TG S F+LPWLG A TGFWG+VIV +WQ GY Sbjct: 1 MPNLIGGLILGFVWQFIYVKGFASIGELTGWSLFELPWLGDARTGFWGIVIVSIWQGGGY 60 Query: 200 MMVIYIAGLAGIPKDLIEAAKIDGARAPQLFKSVYVPLIMPSITICLFLTTSNAFKMFDL 259 +MVIYIA L +P++LIEAAKIDGA +++ +PLIMPS+TICLFLT S +FK+FD Sbjct: 61 IMVIYIAALQNVPQELIEAAKIDGANRLSTLRNITIPLIMPSVTICLFLTISWSFKLFDT 120 Query: 260 NLSLTKGGPGTSTQSLAYNIYAEALINNRYGLGTAKALLFFFAVSLITVTQVWLTKRKEV 319 NLSLT GGP ST+ LA NIY E+ NN GLG+AKA++FF V+ ITVTQV+LTK++EV Sbjct: 121 NLSLTNGGPFKSTEMLALNIYKESFTNNNLGLGSAKAIIFFVVVAAITVTQVYLTKKREV 180 Query: 320 SA 321 A Sbjct: 181 EA 182 >sp|P37730|AMYD_THETU Potential starch degradation products transport system permease protein amyD pir||S37704 amyD protein - Thermoanaerobacterium thermosulfurigenes gb|AAB00843.1| membrane protein for maltose transport [Thermoanaerobacterium thermosulfurigenes] prf||1802282A sugar transport protein Length = 292 Score = 243 bits (619), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 125/280 (44%), Positives = 179/280 (63%), Gaps = 4/280 (1%) Query: 41 IFLWPALLFFLTIVVTPFILGFYYSSTNWNGLDLDKAVWTGADNWKRIFTNDDKFWDSLF 100 +F+ P LL + +V+ PFI+G YYS T+WNG++ + V+ G N+ + +D +FW+S+ Sbjct: 16 LFIAPTLLSLIIVVLIPFIIGIYYSFTDWNGIN--QPVFIGLKNFMTL-RDDAEFWNSII 72 Query: 101 FTLRFTVVSVIXXXXXXXXXXXXXXXXXKTKKVLRTIFFMPNVIGGILLGYIWQFIFTKG 160 FT +F V ++ + +RT F++PN+IGG++LG+IW FIF Sbjct: 73 FTAKFAVACIVIINVVGLSLAMLVTRKIFARNFMRTAFYLPNLIGGLILGFIWNFIFVDV 132 Query: 161 FATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQTAGYMMVIYIAGLAGIPKDLIEAAK 220 F TI + T I + WL T TGFWGLVIV WQ GY+MVIYIA + IP DLIEA+K Sbjct: 133 FQTISDATHIGWLG-GWLSTTNTGFWGLVIVTSWQMIGYVMVIYIAYIESIPTDLIEASK 191 Query: 221 IDGARAPQLFKSVYVPLIMPSITICLFLTTSNAFKMFDLNLSLTKGGPGTSTQSLAYNIY 280 IDGA + Q F++V PLI P+ T+ LF+T SN+FK+FD NLSLT G PG +TQ + NIY Sbjct: 192 IDGANSWQQFRNVVFPLIAPAFTVSLFITLSNSFKLFDQNLSLTAGAPGNTTQMITLNIY 251 Query: 281 AEALINNRYGLGTAKALLFFFAVSLITVTQVWLTKRKEVS 320 A +G AKA++ F +++I+V QV+LT+++EV Sbjct: 252 QTAFSAQEMAVGQAKAVIMFLIIAVISVIQVYLTQKREVE 291 >ref|NP_693490.1| multiple sugar-binding transport system permease [Oceanobacillus iheyensis HTE831] dbj|BAC14525.1| multiple sugar-binding transport system permease [Oceanobacillus iheyensis HTE831] Length = 286 Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 124/280 (44%), Positives = 180/280 (64%), Gaps = 4/280 (1%) Query: 41 IFLWPALLFFLTIVVTPFILGFYYSSTNWNGLDLDKAVWTGADNWKRIFTNDDKFWDSLF 100 +F+ P L+ +V PFI GF YS T+WNGL + + G +N+ R+F ++ F ++++ Sbjct: 10 LFMTPTLVALGLVVFVPFIYGFVYSFTDWNGLQANS--FLGFENYIRLF-QEEHFLNAIW 66 Query: 101 FTLRFTVVSVIXXXXXXXXXXXXXXXXXKTKKVLRTIFFMPNVIGGILLGYIWQFIFTKG 160 FT++F VVS++ KT + RT+FFMPN+IGG++LG+IWQFIF Sbjct: 67 FTIKFAVVSIVLVNVIGLGLALLVTQKLKTSNLFRTVFFMPNLIGGLILGFIWQFIFVSA 126 Query: 161 FATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQTAGYMMVIYIAGLAGIPKDLIEAAK 220 F + G++ G+ F Q WL A TGFWGLVI+ WQ GY+M+IYIA L +P++L+EA++ Sbjct: 127 FNSAGQLLGLEFLQ-GWLSDATTGFWGLVILNAWQYGGYIMIIYIAYLEAVPQELMEASE 185 Query: 221 IDGARAPQLFKSVYVPLIMPSITICLFLTTSNAFKMFDLNLSLTKGGPGTSTQSLAYNIY 280 IDGA Q F V PL+ P+ TI +FLT SNAFKM+D NL+LT GGP ST+ +A +IY Sbjct: 186 IDGANPFQRFWKVTFPLVAPAFTISMFLTLSNAFKMYDQNLALTGGGPFKSTEMIAMDIY 245 Query: 281 AEALINNRYGLGTAKALLFFFAVSLITVTQVWLTKRKEVS 320 A + AKA++FF V+ + +TQV+ K++EV Sbjct: 246 NTAFSDYDMAFAQAKAVIFFILVAAVALTQVYYNKKREVD 285 >ref|ZP_00069191.1| COG1175: ABC-type sugar transport systems, permease components [Oenococcus oeni MCW] Length = 284 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 116/279 (41%), Positives = 177/279 (63%), Gaps = 6/279 (2%) Query: 41 IFLWPALLFFLTIVVTPFILGFYYSSTNWNGLDLDKAVWTGADNWKRIFTNDDKFWDSLF 100 +F+ P L+ I+V PFI+G +YS TN NGL A W G N++ + + DD F +S + Sbjct: 10 LFIAPTLILLAVIIVIPFIIGIFYSFTNSNGL---TASWIGLKNYQLLLS-DDNFLESCW 65 Query: 101 FTLRFTVVSVIXXXXXXXXXXXXXXXXXKT-KKVLRTIFFMPNVIGGILLGYIWQFIFTK 159 T+ F+++SV+ ++LRTIFF+PN+IGGILLG+IWQFIF + Sbjct: 66 LTILFSLLSVVGINVIGLGFALLVTRSDNYFNRLLRTIFFVPNLIGGILLGFIWQFIFIQ 125 Query: 160 GFATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQTAGYMMVIYIAGLAGIPKDLIEAA 219 F GE S+ + WL T TG WGLVI+F WQ +GY+M+IYI+ L IPK+ IE+A Sbjct: 126 IFQAFGESLDWSWLK-GWLSTPATGLWGLVILFWWQMSGYIMLIYISFLNNIPKNTIESA 184 Query: 220 KIDGARAPQLFKSVYVPLIMPSITICLFLTTSNAFKMFDLNLSLTKGGPGTSTQSLAYNI 279 ++DGA Q+F + +P + P+ TI LFLT +N+FK+++ NL+LT GGP ST+ ++ NI Sbjct: 185 ELDGANNQQIFWHIKLPQLAPAFTISLFLTLANSFKIYEQNLALTNGGPYRSTELISMNI 244 Query: 280 YAEALINNRYGLGTAKALLFFFAVSLITVTQVWLTKRKE 318 Y A +N + G A+ ++ F V L++ Q++ ++++E Sbjct: 245 YNTAFVNYQQGYAQAEGIVLFIFVMLVSFAQLYFSRKRE 283 >ref|ZP_00121314.1| hypothetical protein [Bifidobacterium longum DJO10A] ref|NP_695366.1| permease of ABC transporter possibly for oligosaccharides [Bifidobacterium longum NCC2705] gb|AAN24002.1| permease of ABC transporter possibly for oligosaccharides [Bifidobacterium longum NCC2705] Length = 318 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 114/295 (38%), Positives = 160/295 (54%), Gaps = 18/295 (6%) Query: 28 KALRLQRGWGQQIIFLWPALLFFLTIVVTPFILGFYYSSTNWNGLDLDKAVWTGADNWKR 87 KA+R R W +F P F+ + PFI+G Y S + + W G N+ + Sbjct: 41 KAIR--RWWA---LFALPTFAAFIIGFLVPFIMGVYLSFCEFT--TVTDGEWVGLKNYGK 93 Query: 88 IFTNDDKFWDSLFFTLRFTVVSVIXXXXXXXXXXXXXXXXXKTKKVLRTIFFMPNVIGGI 147 D +F +L F+ FT+V+ I K + R++FFMPN+IGGI Sbjct: 94 AL-KDKEFLHALGFSTAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGI 152 Query: 148 LLGYIWQFIFTKGFATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQTAGYMMVIYIAG 207 +LGYIW + A G +++ A GFWGLVI+ WQ GYMM+IYIAG Sbjct: 153 ILGYIWLLLLNGVLAHWGR--ALTY-------KASYGFWGLVILVCWQQIGYMMIIYIAG 203 Query: 208 LAGIPKDLIEAAKIDGARAPQLFKSVYVPLIMPSITICLFLTTSNAFKMFDLNLSLTKGG 267 L +P D++EAA +DGA Q + +PL+MPSIT+C FLT +N FK++D NL+LT G Sbjct: 204 LQALPTDVLEAAAVDGANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGA 263 Query: 268 PGTSTQSLAYNIYAEALINNRY-GLGTAKALLFFFAVSLITVTQVWLTKRKEVSA 321 P ++ LA NI + G+G AKA+LFF V++I + Q LT KEV+A Sbjct: 264 PSNMSEGLALNITRTFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA 318 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.143 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 455,161,223 Number of extensions: 18138949 Number of successful extensions: 61438 Number of sequences better than 1.0e-05: 1248 Number of HSP's gapped: 60456 Number of HSP's successfully gapped: 1248 Length of query: 321 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 195 Effective length of database: 415,135,104 Effective search space: 80951345280 Effective search space used: 80951345280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)