BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0022.p (690 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244679.1| penicillin-binding protein [Bacillus halodurans... 550 e-155 ref|NP_981796.1| penicillin-binding protein [Bacillus cereus ATC... 539 e-152 ref|NP_835036.1| Multimodular transpeptidase-transglycosylase PB... 539 e-151 ref|NP_653838.1| Transglycosyl, Transglycosylase [Bacillus anthr... 535 e-150 ref|NP_391631.1| similar to penicillin-binding protein [Bacillus... 485 e-135 >ref|NP_244679.1| penicillin-binding protein [Bacillus halodurans] pir||D84126 penicillin-binding protein BH3812 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07531.1| penicillin-binding protein [Bacillus halodurans] Length = 687 Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust. Identities = 294/627 (46%), Positives = 393/627 (62%), Gaps = 20/627 (3%) Query: 71 GRSREPVTLNQISPLLIQATLAVEDRKFYKHSGFDVKGMGRAVLANLESGDRTQGASTLT 130 G+ R V L++ISP L +AT+++EDRKFY+H GFD+ +G AV+ANL +G QGAST+T Sbjct: 71 GQQRYWVALDEISPYLKEATISIEDRKFYQHHGFDLTRIGGAVVANLRAGSMAQGASTIT 130 Query: 131 QQLARNLYLSHEKTWTRKAKEALYTMQLEMKYSKDEILNMYLNQIYYGHGAYGIEAASQM 190 QQ ARNLYL H+KTW RKA+EALY ++LEM Y+KD+IL YLN IYYGHGAYGIEAA+Q Sbjct: 131 QQYARNLYLGHDKTWNRKAQEALYALRLEMHYTKDDILEGYLNTIYYGHGAYGIEAAAQH 190 Query: 191 YFGKAAADLDLAESAILAGIPKGPTYYSPYTHMDNAKKRQRIILAAMTEVGDITEAQATA 250 +FGK AA+L LAE+++LAG+PKGP+YYSP D AK RQ IIL +M E G IT +A Sbjct: 191 FFGKKAANLTLAEASMLAGVPKGPSYYSPLVDEDRAKARQEIILQSMVENGYITAQEAEE 250 Query: 251 ARLETLSFKPQGEKNTLAAAPYFRDYVRSLATDTLHISSEELDQGGLNVYTTLDPDMQQA 310 A E L + G + PYF+D V + + + L+ GGL++YTTLDP MQ+ Sbjct: 251 AINEALDYVTDGGMRSETIGPYFQDVVEEQLVEEVGLDPALLESGGLHIYTTLDPHMQEE 310 Query: 311 AEDAVEKGMDPSGDLETALVSIDPRTGYIKAMVGGKNYRTNQFNHALATTRQPGSSFKPI 370 AE VE M P DL+ ALV+IDP TG ++A+VGGKNY + FN A R PGSSFKP Sbjct: 311 AERWVEVEM-PDSDLQVALVAIDPSTGDVRALVGGKNYGESSFNRATKARRSPGSSFKPF 369 Query: 371 MYLTALSSKSMTGLSVFNSQPTLFHYDNDRKTYQPKNFGDKYLGE-INMRQAIAASDNIY 429 +Y AL + T S S+PT F YD R TY P+NF D+Y + + + QA+A SDNI+ Sbjct: 370 LYYAAL-EQGFTPASTLISEPTTFSYDQGRSTYSPRNFQDRYKDDFVTLLQALAFSDNIF 428 Query: 430 AVNTIMKVGADKVADMAAKMGIDSPLQTVPSLALGTSPVSPLEMASAFAVIGGGGVKLPV 489 AV T M +G D++ + A + GI+SPL+ +PSLALGT PV LE+ ++ G + Sbjct: 429 AVKTHMFLGTDELVETARRFGIESPLRDIPSLALGTLPVGVLELTKSYVPFANNGFTVEP 488 Query: 490 TAILKITDANGKLLYEA-PQTQGEKVVEPAAAYVLTRLMEGVFE------SGGTGNRVAS 542 I K+ D +G +LYE P+T E+ ++P +++ LM +F+ TG+ V Sbjct: 489 RFITKVVDRDGNVLYEQMPET--EQTLDPRLTFIMADLMTAMFDPSLNDYMSVTGSSVNH 546 Query: 543 MIKRPVAGKTGTTDTDGWMVGFTPELSTAVWVGYDKGRDIATA-DGRRAAPIFAQFTEKA 601 ++ RPVAGK+G+T TD WMVGFTP+L T VW+GYD+ + +G+ A I+A FTE A Sbjct: 547 LVNRPVAGKSGSTSTDSWMVGFTPQLVTGVWIGYDQSETLNHGTEGQVAKRIWANFTEHA 606 Query: 602 LENVPPKIFPIPDGVVSVYVNPQSGKLATAACPEKVLETFISGTEPKEYCDQHGAGGAVS 661 LEN F P GVVSV +NP +G LA CP F+ GTEP E C + Sbjct: 607 LENELMLQFRQPPGVVSVNMNPSNGFLANDVCPNGRKTFFVEGTEPTEGCPEEAR----- 661 Query: 662 PPDGSGEPPAEDIKEEHSLWKDIKRWW 688 D + E+ E+ RW+ Sbjct: 662 --DNETDAIDEENHEKERFLDRFIRWF 686 >ref|NP_981796.1| penicillin-binding protein [Bacillus cereus ATCC 10987] gb|AAS44404.1| penicillin-binding protein [Bacillus cereus ATCC 10987] Length = 683 Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust. Identities = 273/595 (45%), Positives = 394/595 (66%), Gaps = 10/595 (1%) Query: 68 TTDGRSREPVTLNQISPLLIQATLAVEDRKFYKHSGFDVKGMGRAVLANLESGDRTQGAS 127 + + + R V+LN+ISP + +ATL++ED++FYKH GFD+K + A++A+L++ + QGAS Sbjct: 65 SNEMQKRYNVSLNEISPYVKEATLSIEDQRFYKHHGFDMKRIAGAIVADLKAMAKVQGAS 124 Query: 128 TLTQQLARNLYLSHEKTWTRKAKEALYTMQLEMKYSKDEILNMYLNQIYYGHGAYGIEAA 187 T+TQQ ARNLYL H+KTW RK EA+YT++LE+ Y+K+ IL YLN IYYGHGAYGIEAA Sbjct: 125 TITQQYARNLYLDHDKTWKRKLLEAMYTIRLEVNYNKNHILEGYLNTIYYGHGAYGIEAA 184 Query: 188 SQMYFGKAAADLDLAESAILAGIPKGPTYYSPYTHMDNAKKRQRIILAAMTEVGDITEAQ 247 S++YF K A +L LAE+++LAGIPKGP+ YSP+ D AK+RQ +IL M E G IT+ Q Sbjct: 185 SRLYFDKTAKELTLAEASMLAGIPKGPSVYSPFLKKDRAKERQSLILDEMVEQGYITKKQ 244 Query: 248 ATAARLETLSFKPQGEKNTLAAAPYFRDYVRSLATDTLHISSEELDQGGLNVYTTLDPDM 307 A +A+ E+L+F K APYF+D V++ + + + L +GGL +YTTLDP + Sbjct: 245 AASAKKESLTFASLDTKKVAEVAPYFQDAVQASLLRDIGLDEQALQKGGLRIYTTLDPKL 304 Query: 308 QQAAEDAVEKGMDPSGDLETALVSIDPRTGYIKAMVGGKNYRTNQFNHALATTRQPGSSF 367 Q AE AV+ + + +++TALVS++P+TG + A+VGG +Y T+QFN A RQPGS+F Sbjct: 305 QSVAEQAVKDHIPDTTNIQTALVSMNPKTGEVAALVGGTDYNTSQFNRATQAARQPGSTF 364 Query: 368 KPIMYLTALSSKSMTGLSVFNSQPTLFHYDNDRKTYQPKNFGDKYLGE-INMRQAIAASD 426 KP +Y AL + T + S+ T+F + Y+PKN+ D Y + + M QA+A SD Sbjct: 365 KPFLYYAAL-ERGFTPATRLKSEYTVFTLGDGVSKYKPKNYKDYYADDFVTMAQALAVSD 423 Query: 427 NIYAVNTIMKVGADKVADMAAKMGIDSPLQTVPSLALGTSPVSPLEMASAFAVIGGGGVK 486 N+YAV T + +G D + A + GI S L+ VPSLALGTSPV P+EM +A+++ GG + Sbjct: 424 NVYAVKTNLFLGEDILTKTAKQFGIKSALKDVPSLALGTSPVKPIEMVNAYSMFANGGKE 483 Query: 487 LPVTAILKITDANGKLLYEAPQTQGEKVVEPAAAYVLTRLMEGVFE------SGGTGNRV 540 + I +I D G +LY+A + ++V++ + A+V+ +M G+F + TG + Sbjct: 484 VKPIFIRRIMDHEGNILYDA-HLESKQVLDKSKAFVMEEMMTGMFNKKLSSYAAVTGQSM 542 Query: 541 ASMIKRPVAGKTGTTDTDGWMVGFTPELSTAVWVGYDKGRDIA-TADGRRAAPIFAQFTE 599 S + R AGK+G+T+TD WM+GFTP+L T VWVGYD+ + I+ A+ A I+ E Sbjct: 543 LSKLSRTYAGKSGSTETDSWMIGFTPQLVTGVWVGYDQPKSISNVAEQGYAKRIWTDTME 602 Query: 600 KALENVPPKIFPIPDGVVSVYVNPQSGKLATAACPEKVLETFISGTEPKEYCDQH 654 K L+ P K F P VV+V +NP++GK+AT CP V F GTEP EYC H Sbjct: 603 KGLDGQPKKEFKQPSDVVAVDINPENGKIATKNCPISVKMYFAKGTEPTEYCMDH 657 >ref|NP_835036.1| Multimodular transpeptidase-transglycosylase PBP 2D [Bacillus cereus ATCC 14579] gb|AAP12237.1| Multimodular transpeptidase-transglycosylase PBP 2D [Bacillus cereus ATCC 14579] Length = 683 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 276/591 (46%), Positives = 391/591 (66%), Gaps = 10/591 (1%) Query: 72 RSREPVTLNQISPLLIQATLAVEDRKFYKHSGFDVKGMGRAVLANLESGDRTQGASTLTQ 131 + R V+LN+ISP + +ATL++ED++FYKH GFDVK + A++A+L++ + QGAST+TQ Sbjct: 69 QKRYNVSLNEISPYVKEATLSIEDQRFYKHHGFDVKRIAGAIVADLKAMAKVQGASTITQ 128 Query: 132 QLARNLYLSHEKTWTRKAKEALYTMQLEMKYSKDEILNMYLNQIYYGHGAYGIEAASQMY 191 Q ARNLYL H+KTW RK EA+YT++LE+ Y+K+ IL YLN IYYGHGAYGIEAAS++Y Sbjct: 129 QYARNLYLDHDKTWKRKLLEAMYTIRLEVNYNKNHILEGYLNTIYYGHGAYGIEAASRLY 188 Query: 192 FGKAAADLDLAESAILAGIPKGPTYYSPYTHMDNAKKRQRIILAAMTEVGDITEAQATAA 251 F K A +L LAE+++LAGIPKGP+ YSP+ D AK RQ +IL M + G IT+ QAT A Sbjct: 189 FDKTAKELTLAEASMLAGIPKGPSVYSPFLKEDRAKGRQALILDEMVKQGYITKQQATLA 248 Query: 252 RLETLSFKPQGEKNTLAAAPYFRDYVRSLATDTLHISSEELDQGGLNVYTTLDPDMQQAA 311 + ETL+F K APYF+D V++ + + + L +GGL +YTTLDP +Q A Sbjct: 249 KKETLTFASLDTKKVAEVAPYFQDAVQASLLRDVGLDEQALQRGGLRIYTTLDPKLQAVA 308 Query: 312 EDAVEKGMDPSGDLETALVSIDPRTGYIKAMVGGKNYRTNQFNHALATTRQPGSSFKPIM 371 E AV+ + + +++TALVS++P TG + A+VGG +Y +QFN A RQPGS+FKP + Sbjct: 309 EQAVKDHIPDTTNIQTALVSMNPTTGEVAALVGGTDYNMSQFNRATQAVRQPGSTFKPFL 368 Query: 372 YLTALSSKSMTGLSVFNSQPTLFHYDNDRKTYQPKNFGDKYLGE-INMRQAIAASDNIYA 430 Y AL + T + S+ T+F + Y+PKN+ D Y + + M QA+A SDNIYA Sbjct: 369 YYAAL-ERGFTPATRLKSEYTVFTLGDGVSKYKPKNYKDYYADDFVTMAQALAVSDNIYA 427 Query: 431 VNTIMKVGADKVADMAAKMGIDSPLQTVPSLALGTSPVSPLEMASAFAVIGGGGVKLPVT 490 V T + +G D +A A + GI S L+ VPSLALGTSPV P+EM +A+++ GG ++ T Sbjct: 428 VKTNLFLGDDTLAKTAKQFGIKSALKDVPSLALGTSPVKPIEMVNAYSMFANGGKEVKPT 487 Query: 491 AILKITDANGKLLYEAPQTQGEKVVEPAAAYVLTRLMEGVFE------SGGTGNRVASMI 544 I +I D G +LY+A + ++V++ + A+V+ +M G+F + TG + S + Sbjct: 488 FIRRIMDHEGNILYDA-HLESKQVLDKSKAFVMEEMMTGMFNKKLSSYAAVTGQSMLSKL 546 Query: 545 KRPVAGKTGTTDTDGWMVGFTPELSTAVWVGYDKGRDIA-TADGRRAAPIFAQFTEKALE 603 R AGK+G+T+TD WM+GFTP++ T VWVGYD+ + I+ A+ A I+ EK L+ Sbjct: 547 SRTYAGKSGSTETDSWMIGFTPQIVTGVWVGYDQPKSISNVAEQGYAKKIWTDTMEKGLD 606 Query: 604 NVPPKIFPIPDGVVSVYVNPQSGKLATAACPEKVLETFISGTEPKEYCDQH 654 P K F P VV+V +NP++GK+AT CP V F GTEP EYC H Sbjct: 607 GQPKKEFKQPSDVVAVNINPENGKIATKNCPISVKMYFAKGTEPTEYCMDH 657 >ref|NP_653838.1| Transglycosyl, Transglycosylase [Bacillus anthracis A2012] ref|NP_847774.1| penicillin-binding protein [Bacillus anthracis str. Ames] gb|AAP29260.1| penicillin-binding protein [Bacillus anthracis str. Ames] Length = 683 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 279/624 (44%), Positives = 399/624 (63%), Gaps = 17/624 (2%) Query: 72 RSREPVTLNQISPLLIQATLAVEDRKFYKHSGFDVKGMGRAVLANLESGDRTQGASTLTQ 131 + R V+LN+ISP + +ATL++ED++FYKH GFD+K + A++A+L++ + QGAST+TQ Sbjct: 69 QKRYNVSLNEISPYVKEATLSIEDQRFYKHHGFDMKRIAGAIVADLKAMAKVQGASTITQ 128 Query: 132 QLARNLYLSHEKTWTRKAKEALYTMQLEMKYSKDEILNMYLNQIYYGHGAYGIEAASQMY 191 Q ARNLYL H+KTW RK EA+YT++LE+ Y+K+ IL YLN IYYGHGAYGIEAAS++Y Sbjct: 129 QYARNLYLDHDKTWKRKLLEAMYTIRLEVNYNKNHILEGYLNTIYYGHGAYGIEAASRLY 188 Query: 192 FGKAAADLDLAESAILAGIPKGPTYYSPYTHMDNAKKRQRIILAAMTEVGDITEAQATAA 251 F K A +L LAE+++LAGIPKGP+ YSP+ D AK RQ +IL M E G IT+ QA +A Sbjct: 189 FDKTAKELTLAEASMLAGIPKGPSVYSPFLKEDRAKGRQSLILDEMVEQGYITKKQAASA 248 Query: 252 RLETLSFKPQGEKNTLAAAPYFRDYVRSLATDTLHISSEELDQGGLNVYTTLDPDMQQAA 311 + E L+F K APYF+D V++ + + + L +GGL +YTTLDP +Q A Sbjct: 249 KKEPLTFASLDTKKVAEVAPYFQDAVQASLLRDVGLDEQALQKGGLRIYTTLDPKLQSVA 308 Query: 312 EDAVEKGMDPSGDLETALVSIDPRTGYIKAMVGGKNYRTNQFNHALATTRQPGSSFKPIM 371 E AV+ + + +++TALVS++P+TG + A+VGG +Y T+QFN A RQPGS+FKP + Sbjct: 309 EQAVKDHIPDTTNIQTALVSMNPKTGEVAALVGGTDYNTSQFNRATQGARQPGSTFKPFL 368 Query: 372 YLTALSSKSMTGLSVFNSQPTLFHYDNDRKTYQPKNFGDKYLGE-INMRQAIAASDNIYA 430 Y AL + T + S+ T+F + Y+PKN+ D Y + + M QA+A SDN+YA Sbjct: 369 YYAAL-ERGFTPATRLKSEYTVFTLGDGVSKYKPKNYKDYYADDFVTMAQALAVSDNVYA 427 Query: 431 VNTIMKVGADKVADMAAKMGIDSPLQTVPSLALGTSPVSPLEMASAFAVIGGGGVKLPVT 490 V T + +G D + A + GI S L+ VPSLALGTSPV P+EM +A+++ GG ++ T Sbjct: 428 VKTNLFLGEDILTKTAKQFGIKSALKDVPSLALGTSPVKPIEMVNAYSMFANGGKEVKPT 487 Query: 491 AILKITDANGKLLYEAPQTQGEKVVEPAAAYVLTRLMEGVFE------SGGTGNRVASMI 544 I +I D G +LY+A + ++V++ A+V+ +M G+F + TG + S + Sbjct: 488 FIRRIMDHEGNILYDA-HLESKQVLDKNKAFVMEEMMTGMFNKKLSSYAAVTGQSMLSKL 546 Query: 545 KRPVAGKTGTTDTDGWMVGFTPELSTAVWVGYDKGRDIA-TADGRRAAPIFAQFTEKALE 603 R AGK+G+T+TD WM+GFTP++ T VWVGYD+ + I+ A+ A I+ EK L+ Sbjct: 547 SRTYAGKSGSTETDSWMIGFTPQIVTGVWVGYDQPKSISNVAEQGYAKRIWTDTMEKGLD 606 Query: 604 NVPPKIFPIPDGVVSVYVNPQSGKLATAACPEKVLETFISGTEPKEYCDQHGAGGAVSPP 663 P K F P VV+V +NP++GK+AT CP V F GTEP EYC H Sbjct: 607 GQPKKEFKRPSDVVAVDINPENGKIATKNCPISVKMYFAKGTEPTEYCMDH-------VD 659 Query: 664 DGSGEPPAEDIKEEHSLWKDIKRW 687 D + K++ S WK W Sbjct: 660 DKEEFEKTSEEKKKTSWWKKYLPW 683 >ref|NP_391631.1| similar to penicillin-binding protein [Bacillus subtilis] pir||F70057 penicillin-binding protein homolog ywhE - Bacillus subtilis emb|CAB02515.1| unknown, highly similar to penicillin binding protein [Bacillus subtilis] emb|CAB15778.1| ywhE [Bacillus subtilis subsp. subtilis str. 168] Length = 647 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 253/575 (44%), Positives = 365/575 (63%), Gaps = 10/575 (1%) Query: 68 TTDGRSREPVTLNQISPLLIQATLAVEDRKFYKHSGFDVKGMGRAVLANLESGDRTQGAS 127 T G R V L ++P +++AT+A+ED+ FY H GFD K M A LA+L++ + QGAS Sbjct: 68 TNYGEKRYWVPLKDMNPTIVKATVAIEDQNFYDHHGFDYKRMAGAALADLKAFAKVQGAS 127 Query: 128 TLTQQLARNLYLSHEKTWTRKAKEALYTMQLEMKYSKDEILNMYLNQIYYGHGAYGIEAA 187 T+TQQ ARNLYL H+KTW RK EA YT++LE YSKDEIL YLN IYYGHGAYGIEAA Sbjct: 128 TITQQYARNLYLEHDKTWKRKWNEAFYTIRLEQNYSKDEILEGYLNTIYYGHGAYGIEAA 187 Query: 188 SQMYFGKAAADLDLAESAILAGIPKGPTYYSPYTHMDNAKKRQRIILAAMTEVGDITEAQ 247 S++YFGK A +L AE+A+LAGIPKGP+ YSPY + AK+RQ+ I+ M + I++ + Sbjct: 188 SRLYFGKHAKNLTDAEAALLAGIPKGPSGYSPYVNETKAKERQKTIVRMMEKQQMISQKK 247 Query: 248 ATAARLETLSFKPQGEKNTLAAAPYFRDYVRSLATDTLHISSEELDQGGLNVYTTLDPDM 307 A E LS++P ++ + APYF D L ++ E+++ GLNVYTT+D M Sbjct: 248 ADELIKEPLSYQPLNKQVSKRKAPYFYDNAMRELEKKLGMTREQIETSGLNVYTTVDKRM 307 Query: 308 QQAAEDAVEKGMDPSGDLETALVSIDPRTGYIKAMVGGKNYRTNQFNHALATTRQPGSSF 367 Q+ AE+ + + ++ D++ +IDPRTG + A+VGG++Y+ + F+ RQP S+ Sbjct: 308 QRIAEETITETVNAGSDIQVGFSAIDPRTGNVLALVGGRDYQKSPFDRTTQAKRQPASTI 367 Query: 368 KPIMYLTALSSKSMTGLSVFNSQPTLFHYDNDRKTYQPKNFGDKYLGE-INMRQAIAASD 426 KP++Y A+ S T +++ S+ T F D +TY P N+ Y + I + QA+A SD Sbjct: 368 KPLLYYKAIQS-GFTPVTLMKSEETEFQIDAKGETYSPSNYNGYYANKPITLLQALALSD 426 Query: 427 NIYAVNTIMKVGADKVADMAAKMGIDSPLQTVPSLALGTSPVSPLEMASAFAVIGGGGVK 486 NIYAV T + +G +K+ A + GI + LQ +PSLALGT PV P+EM +A+A++ GG K Sbjct: 427 NIYAVKTHLFLGTNKLVKTAKEFGITAHLQALPSLALGTEPVRPIEMVNAYAMLANGGKK 486 Query: 487 LPVTAILKITDANGKLLYEAPQTQGEKVVEPAAAYVLTRLMEGVFE------SGGTGNRV 540 + T I ++TDA G +LYE P Q ++V++ AA+V +M G+F+ + TG + Sbjct: 487 IEPTFISRVTDAAGHVLYENPN-QHKQVLDEKAAFVTASMMTGMFDIDLNGYTSVTGRTI 545 Query: 541 ASMIKRPVAGKTGTTDTDGWMVGFTPELSTAVWVGYDKGRDIATADGRR-AAPIFAQFTE 599 A+ + R AGK+GTT D WM+GF P+L+ VW GYDK I + + + A I+A F E Sbjct: 546 ANRLTRTYAGKSGTTSADSWMIGFNPKLAAGVWTGYDKNSTIDSVEEKSYAKTIWADFME 605 Query: 600 KALENVPPKIFPIPDGVVSVYVNPQSGKLATAACP 634 AL+ P F P GV VY++P++G + A P Sbjct: 606 DALKGEPETAFKPPKGVTGVYIDPETGYSSGPAAP 640 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.132 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,011,095,620 Number of extensions: 42347110 Number of successful extensions: 93469 Number of sequences better than 1.0e-05: 1792 Number of HSP's gapped: 89202 Number of HSP's successfully gapped: 2010 Length of query: 690 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 557 Effective length of database: 396,129,411 Effective search space: 220644081927 Effective search space used: 220644081927 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)