BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0016.p
         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00098073.1| COG0791: Cell wall-associated hydrolases (inv...   140   1e-32
ref|ZP_00103944.1| COG0791: Cell wall-associated hydrolases (inv...   130   8e-30
ref|ZP_00180763.1| hypothetical protein Mther124201 [Moorella th...   128   4e-29
ref|NP_951926.1| LysM domain/NLP/P60 family protein [Geobacter s...   124   9e-28
ref|ZP_00097209.1| COG0791: Cell wall-associated hydrolases (inv...   124   1e-27

>ref|ZP_00098073.1| COG0791: Cell wall-associated hydrolases (invasion-associated
           proteins) [Desulfitobacterium hafniense]
          Length = 212

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 84/109 (77%), Gaps = 1/109 (0%)

Query: 22  KTIGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGTPVSRNNLRSGDLVF 81
           K IGT Y FGGT+T+GFDCSGFT+YVFK  G+ LPRTS AQ+ +GT VS++ L+ GDLVF
Sbjct: 104 KLIGTPYVFGGTTTNGFDCSGFTQYVFKGSGIDLPRTSYAQYGIGTAVSKDELQIGDLVF 163

Query: 82  FNTFGSGVSHVGIYVGNGKFAQSSSSRGVTITSLSQAYWANRYVGAKRV 130
           F T+ SG SHVGIY+G   F  ++ S G+ IT LS +Y+A RY+GA+RV
Sbjct: 164 FATYDSGASHVGIYIGEENFIHAARS-GIKITGLSDSYYAGRYLGARRV 211


>ref|ZP_00103944.1| COG0791: Cell wall-associated hydrolases (invasion-associated
           proteins) [Desulfitobacterium hafniense]
          Length = 285

 Score =  130 bits (328), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 85/106 (80%), Gaps = 1/106 (0%)

Query: 25  GTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGTPVSRNNLRSGDLVFFNT 84
           GT Y FGGTSTSGFDCSGFT+Y++   G++LPRTS  QF+ G+ VS++NL++GDLVFF+T
Sbjct: 179 GTKYVFGGTSTSGFDCSGFTKYIYSGSGISLPRTSFDQFNSGSSVSKDNLQAGDLVFFST 238

Query: 85  FGSGVSHVGIYVGNGKFAQSSSS-RGVTITSLSQAYWANRYVGAKR 129
           + SG SHVGIY+GNGKF  +++   GV ++ +S +++  RY+GA+R
Sbjct: 239 YASGASHVGIYIGNGKFVHAANPGSGVKVSGVSDSFYGPRYLGARR 284


>ref|ZP_00180763.1| hypothetical protein Mther124201 [Moorella thermoacetica ATCC
           39073]
          Length = 120

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 86/118 (72%), Gaps = 2/118 (1%)

Query: 14  SKMDTVIAKTIGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGTPVSRNN 73
           +++  +  + +G+ Y++GGTS  GFDCSGFT YVF+ VG+ LP ++  Q S+GT + + +
Sbjct: 3   ARIAAIARQYVGSPYRWGGTSPKGFDCSGFTLYVFQRVGINLPHSASDQASLGTHIDKGD 62

Query: 74  LRSGDLVFFNTFGSGVSHVGIYVGNGKFAQSSSSRGVTITSLSQA-YWANRYVGAKRV 130
           L+ GDLVFF+T+   +SHVGIY+GNGKF  S+++RGV I S+    YW  RYVGA+RV
Sbjct: 63  LQPGDLVFFHTYSQDISHVGIYLGNGKFI-SATNRGVAIDSIDDPYYWGPRYVGARRV 119


>ref|NP_951926.1| LysM domain/NLP/P60 family protein [Geobacter sulfurreducens PCA]
 gb|AAR34199.1| LysM domain/NLP/P60 family protein [Geobacter sulfurreducens PCA]
          Length = 342

 Score =  124 bits (310), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 78/108 (72%), Gaps = 1/108 (0%)

Query: 24  IGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGTPVSRNNLRSGDLVFFN 83
           IGT Y+FGGT+  G DCS F ++VF+ + +TLPRT++ QF VG PV+  +L+ GDL+FF+
Sbjct: 198 IGTRYRFGGTTRKGLDCSSFVQHVFRELDVTLPRTAREQFHVGNPVATGDLQKGDLLFFH 257

Query: 84  TFGSGVSHVGIYVGNGKFAQSSS-SRGVTITSLSQAYWANRYVGAKRV 130
           T+    SHVGIY+GN K   +SS  R V I+S+   Y+ +R++GAKR+
Sbjct: 258 TYARFPSHVGIYLGNNKMIHASSRDRRVVISSIDTPYYRSRFIGAKRI 305


>ref|ZP_00097209.1| COG0791: Cell wall-associated hydrolases (invasion-associated
           proteins) [Desulfitobacterium hafniense]
          Length = 227

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 79/107 (73%), Gaps = 2/107 (1%)

Query: 25  GTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGTPVSRNNLRSGDLVFFN- 83
           G  Y +GGT+ SGFDCSGFT+YVF+  G+TLPRTS  Q+ +GT VS N+L  GDLVFFN 
Sbjct: 121 GVPYLWGGTTPSGFDCSGFTQYVFEKNGITLPRTSNQQYQIGTSVSFNSLIPGDLVFFNF 180

Query: 84  TFGSGVSHVGIYVGNGKFAQSSSSRGVTITSLSQAYWANRYVGAKRV 130
             GS VSHVGIY+G+G+F  ++S +GV IT     YW N YVGAKRV
Sbjct: 181 NSGSVVSHVGIYMGDGQFISATSGKGV-ITYGFTPYWKNAYVGAKRV 226


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 203,939,175
Number of extensions: 8204493
Number of successful extensions: 17811
Number of sequences better than 1.0e-05: 443
Number of HSP's gapped: 17214
Number of HSP's successfully gapped: 447
Length of query: 142
Length of database: 757,237,578
Length adjustment: 103
Effective length of query: 39
Effective length of database: 477,582,381
Effective search space: 18625712859
Effective search space used: 18625712859
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)