BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0012.p
         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_658322.1| cytochrome_c, Cytochrome c [Bacillus anthracis ...    74   1e-12
ref|NP_834000.1| Membrane-attached cytochrome c550 [Bacillus cer...    73   2e-12
ref|NP_980664.1| cytochrome c-550 [Bacillus cereus ATCC 10987] >...    72   4e-12
ref|ZP_00181893.1| hypothetical protein Exigu283301 [Exiguobacte...    70   2e-11
dbj|BAC53978.1| cytochrome c551 [Geobacillus stearothermophilus]       69   2e-11

>ref|NP_658322.1| cytochrome_c, Cytochrome c [Bacillus anthracis A2012]
 ref|NP_846738.1| cytochrome c-550 [Bacillus anthracis str. Ames]
 gb|AAP28224.1| cytochrome c-550 [Bacillus anthracis str. Ames]
          Length = 118

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 4/75 (5%)

Query: 45  AAGAEATVKANCITCHGDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPSFKDKLAP 104
           A+  E  VK +C +CHGDQLQG VGP+LQ+ GGK   EEI  +++KG+G MP     L P
Sbjct: 47  ASKPEDIVKQSCTSCHGDQLQGAVGPNLQKIGGKLSKEEIQEVISKGKGNMPP---NLVP 103

Query: 105 -EEIANVAMWLAEKK 118
            ++ A VA WL++KK
Sbjct: 104 ADQAAKVADWLSKKK 118


>ref|NP_834000.1| Membrane-attached cytochrome c550 [Bacillus cereus ATCC 14579]
 gb|AAP11201.1| Membrane-attached cytochrome c550 [Bacillus cereus ATCC 14579]
          Length = 118

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 52/74 (70%), Gaps = 2/74 (2%)

Query: 45  AAGAEATVKANCITCHGDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPSFKDKLAP 104
           A+  E  VK +C +CHGDQLQG VGP+LQ+ GGK   +EI  I++KG+G MP+  + +  
Sbjct: 47  ASKPEDIVKQSCTSCHGDQLQGAVGPNLQKIGGKLSKDEIKEILSKGKGNMPA--NIVPA 104

Query: 105 EEIANVAMWLAEKK 118
           ++ A VA WL++KK
Sbjct: 105 DQAAKVADWLSKKK 118


>ref|NP_980664.1| cytochrome c-550 [Bacillus cereus ATCC 10987]
 gb|AAS43272.1| cytochrome c-550 [Bacillus cereus ATCC 10987]
          Length = 118

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 2/74 (2%)

Query: 45  AAGAEATVKANCITCHGDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPSFKDKLAP 104
           A+  E  VK +C +CHGDQLQG VGP+LQ+ GGK   +EI  I++KG+G MP   + +  
Sbjct: 47  ASKPEDIVKQSCTSCHGDQLQGAVGPNLQKIGGKLSKDEIKEILSKGKGNMPP--NIVPA 104

Query: 105 EEIANVAMWLAEKK 118
           ++ A VA WL++KK
Sbjct: 105 DQAAKVADWLSKKK 118


>ref|ZP_00181893.1| hypothetical protein Exigu283301 [Exiguobacterium sp. 255-15]
          Length = 120

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 5/76 (6%)

Query: 45  AAGAEATVKANCITCHGDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPS--FKDKL 102
           A  AE     NC +CHG+ L+G VGP+L + G K+ +EEI  I+  G+GQMP+   KD  
Sbjct: 48  AVDAEKIFANNCASCHGNNLEGNVGPNLTKVGAKYSSEEIQKIIKNGKGQMPAGILKD-- 105

Query: 103 APEEIANVAMWLAEKK 118
             +EI  VA WLA+KK
Sbjct: 106 -DKEIVAVADWLADKK 120


>dbj|BAC53978.1| cytochrome c551 [Geobacillus stearothermophilus]
          Length = 110

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 45  AAGAEATVKANCITCHGDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPSFKDKLAP 104
           AA AE   K NC +CHG  L GGVGP+LQ+ G K+  E+I  I+  GRG MP+    +  
Sbjct: 39  AASAEQIYKQNCASCHGQDLSGGVGPNLQKVGSKYSKEQIKEIIANGRGAMPA--GIIKG 96

Query: 105 EEIANVAMWLAEKK 118
           E+   VA WLA KK
Sbjct: 97  EDADKVAEWLASKK 110


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 163,570,062
Number of extensions: 5605384
Number of successful extensions: 9145
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 9179
Number of HSP's successfully gapped: 25
Length of query: 118
Length of database: 757,237,578
Length adjustment: 83
Effective length of query: 35
Effective length of database: 531,884,361
Effective search space: 18615952635
Effective search space used: 18615952635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)