BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0006.p (757 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832377.1| Sporulation kinase [Bacillus cereus ATCC 14579]... 228 6e-58 ref|NP_389236.1| similar to two-component sensor histidine kinas... 224 9e-57 ref|NP_656515.1| HATPase_c, Histidine kinase-like ATPases [Bacil... 223 1e-56 ref|NP_844998.1| sensor histidine kinase [Bacillus anthracis str... 223 1e-56 ref|NP_978968.1| hypothetical protein BCE2662 [Bacillus cereus A... 223 1e-56 >ref|NP_832377.1| Sporulation kinase [Bacillus cereus ATCC 14579] gb|AAP09578.1| Sporulation kinase [Bacillus cereus ATCC 14579] Length = 407 Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 167/234 (71%), Gaps = 1/234 (0%) Query: 509 VSRDMTERNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQEKQILVPLHI 568 + RD+TER + EELL +S+ L +GQLAAGVAHE+RNPLT ++GF+QL Q + + Sbjct: 152 IVRDITERKKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYF 211 Query: 569 ELMLSELERINMIVSEFLILAKPQAVHFQLRDVRLILGDVISLLDSQAHLFGIEFEARFS 628 +LMLSE+ERI I+ EFL +AK ++ + +++ I +V+SL++++A + I+ E Sbjct: 212 DLMLSEIERIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTG 271 Query: 629 QQPATVHCEENQLKQVFINIVKNAIEAMPDGGTIILE-QQIIDGTVVIVISDEGEGVPEE 687 + + C ENQLKQVFINI++N+IEAMP+GG I + ++I D V+I + DEG G+PEE Sbjct: 272 DKDIIIECSENQLKQVFINILQNSIEAMPNGGGISIHIKEINDDGVIIHVIDEGIGIPEE 331 Query: 688 ILPKLGEPFFTNKETGTGLGLMVSQRIIQSHKGSLEIHSEYGSGAQVTIKLPEA 741 + +LGEPF++ KE GTG+GLM+S +II+SH+G++ I SE G G VTI LP+ Sbjct: 332 RIKRLGEPFYSTKEKGTGIGLMLSYKIIESHQGTISIRSEVGVGTTVTIYLPKV 385 >ref|NP_389236.1| similar to two-component sensor histidine kinase [Bacillus subtilis] pir||B69863 two-component sensor histidine kinase homolog ykrQ - Bacillus subtilis emb|CAB13226.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 738 Score = 224 bits (570), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 115/233 (49%), Positives = 162/233 (69%), Gaps = 2/233 (0%) Query: 509 VSRDMTERNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQL-QQEKQILVPLH 567 + +D+TER +EE LR+S+ L VG+LAAG+AHEIRNP+T L+GF+QL + + L+ Sbjct: 494 IFKDVTERKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALY 553 Query: 568 IELMLSELERINMIVSEFLILAKPQAVHFQLRDVRLILGDVISLLDSQAHLFGIEFEARF 627 ++ SEL+RI I++EFLILAKPQA+ ++ + V I+ D I LL++QA+L ++ + Sbjct: 554 FNVITSELKRIESIITEFLILAKPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQMQLDL 613 Query: 628 SQQPATVHCEENQLKQVFINIVKNAIEAMPDGGTIILEQQIID-GTVVIVISDEGEGVPE 686 ++CE NQLKQVFINI+KNAIE MPDGG I + + +D V+I + DEG G+ E Sbjct: 614 IDDIPPIYCEPNQLKQVFINILKNAIEVMPDGGNIFVTIKALDQDHVLISLKDEGIGMTE 673 Query: 687 EILPKLGEPFFTNKETGTGLGLMVSQRIIQSHKGSLEIHSEYGSGAQVTIKLP 739 + L +LGEPF+T KE GTGLGLMVS +II+ H+G + + SE G G I LP Sbjct: 674 DKLKRLGEPFYTTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHITLP 726 >ref|NP_656515.1| HATPase_c, Histidine kinase-like ATPases [Bacillus anthracis A2012] Length = 316 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 166/240 (69%), Gaps = 3/240 (1%) Query: 509 VSRDMTERNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQEKQILVPLHI 568 + RD+TER + EELL +S+ L +GQLAAGVAHE+RNPLT ++GF+QL Q + + Sbjct: 61 IVRDITERKKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYF 120 Query: 569 ELMLSELERINMIVSEFLILAKPQAVHFQLRDVRLILGDVISLLDSQAHLFGIEFEARFS 628 +LMLSE+ERI I+ EFL +AK + + +++ I +V+SL++++A + I+ E Sbjct: 121 DLMLSEIERIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTD 180 Query: 629 QQPATVHCEENQLKQVFINIVKNAIEAMPDGGTIILEQQII--DGTVVIVISDEGEGVPE 686 + + C ENQLKQVFINI++N+IEAMPDGG I + + I DG ++ VI D+G G+P Sbjct: 181 SKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVI-DKGIGIPA 239 Query: 687 EILPKLGEPFFTNKETGTGLGLMVSQRIIQSHKGSLEIHSEYGSGAQVTIKLPEAGEHTP 746 E + +LGEPF++ KE GTG+GLM+S +II+SH+G++ I SE G G VTI LP+ P Sbjct: 240 ERIKRLGEPFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPKIQSKKP 299 >ref|NP_844998.1| sensor histidine kinase [Bacillus anthracis str. Ames] gb|AAP26484.1| sensor histidine kinase [Bacillus anthracis str. Ames] Length = 471 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 166/240 (69%), Gaps = 3/240 (1%) Query: 509 VSRDMTERNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQEKQILVPLHI 568 + RD+TER + EELL +S+ L +GQLAAGVAHE+RNPLT ++GF+QL Q + + Sbjct: 216 IVRDITERKKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYF 275 Query: 569 ELMLSELERINMIVSEFLILAKPQAVHFQLRDVRLILGDVISLLDSQAHLFGIEFEARFS 628 +LMLSE+ERI I+ EFL +AK + + +++ I +V+SL++++A + I+ E Sbjct: 276 DLMLSEIERIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTD 335 Query: 629 QQPATVHCEENQLKQVFINIVKNAIEAMPDGGTIILEQQII--DGTVVIVISDEGEGVPE 686 + + C ENQLKQVFINI++N+IEAMPDGG I + + I DG ++ VI D+G G+P Sbjct: 336 SKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVI-DKGIGIPA 394 Query: 687 EILPKLGEPFFTNKETGTGLGLMVSQRIIQSHKGSLEIHSEYGSGAQVTIKLPEAGEHTP 746 E + +LGEPF++ KE GTG+GLM+S +II+SH+G++ I SE G G VTI LP+ P Sbjct: 395 ERIKRLGEPFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPKIQSKKP 454 >ref|NP_978968.1| hypothetical protein BCE2662 [Bacillus cereus ATCC 10987] gb|AAS41576.1| hypothetical protein BCE2662 [Bacillus cereus ATCC 10987] Length = 595 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/240 (47%), Positives = 167/240 (69%), Gaps = 3/240 (1%) Query: 509 VSRDMTERNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQEKQILVPLHI 568 + RD+TER + EELL +S+ L +GQLAAGVAHE+RNPLT ++GF+QL Q + + Sbjct: 340 IVRDITERKKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYF 399 Query: 569 ELMLSELERINMIVSEFLILAKPQAVHFQLRDVRLILGDVISLLDSQAHLFGIEFEARFS 628 +LMLSE+ERI I+ EFL +AK + + +++ I +V+SL++++A + I+ E Sbjct: 400 DLMLSEIERIEAILQEFLSIAKTDELSTEKKNLYQIFKNVVSLINTKAIMTNIQVELYAD 459 Query: 629 QQPATVHCEENQLKQVFINIVKNAIEAMPDGGTIILEQQII--DGTVVIVISDEGEGVPE 686 + + C ENQLKQVFINI++N+IEAMPDGG I + + I DG ++ VI D+G G+PE Sbjct: 460 SKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIINVI-DKGIGIPE 518 Query: 687 EILPKLGEPFFTNKETGTGLGLMVSQRIIQSHKGSLEIHSEYGSGAQVTIKLPEAGEHTP 746 E + +LGEPF++ KE GTG+GLM+S +II+SH+G++ I SE G G VTI LP+ P Sbjct: 519 ERIKRLGEPFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPKFQSKKP 578 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,021,178,618 Number of extensions: 42154352 Number of successful extensions: 153352 Number of sequences better than 1.0e-05: 4700 Number of HSP's gapped: 146866 Number of HSP's successfully gapped: 4761 Length of query: 757 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 624 Effective length of database: 396,129,411 Effective search space: 247184752464 Effective search space used: 247184752464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)