BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0001.p (193 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240936.1| stage V sporulation protein T [Bacillus halodur... 246 1e-64 ref|ZP_00180375.1| hypothetical protein Mther171501 [Moorella th... 239 2e-62 ref|NP_387937.1| transcriptional regulator [Bacillus subtilis] >... 238 5e-62 ref|NP_654002.1| hypothetical protein predicted by GeneMark [Bac... 234 7e-61 ref|NP_829956.1| Stage V sporulation protein T [Bacillus cereus ... 233 2e-60 >ref|NP_240936.1| stage V sporulation protein T [Bacillus halodurans] pir||F83658 stage V sporulation protein T spoVT [imported] - Bacillus halodurans (strain C-125) dbj|BAB03789.1| stage V sporulation protein T [Bacillus halodurans] Length = 179 Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 117/180 (65%), Positives = 147/180 (81%), Gaps = 1/180 (0%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPI ELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYAE+L++ H +I DRD++IA+AG SKKDY K +G ++E M +RK+++ T+AG Y Sbjct: 61 EYAEALYDSLNHSVLIADRDTYIAVAGSSKKDYTNKSIGDMIESAMNDRKSIVHTDAGEY 120 Query: 134 DIGKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGKQMEQ 193 ++ + E + V APII+ GDPIG VV+ +KD++++ Q+E K+AETAA+FL +QMEQ Sbjct: 121 NLVGEQQEELKGCVIAPIIANGDPIGAVVIFNKDETLQ-GQVEQKLAETAASFLARQMEQ 179 >ref|ZP_00180375.1| hypothetical protein Mther171501 [Moorella thermoacetica ATCC 39073] Length = 183 Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 123/184 (66%), Positives = 145/184 (78%), Gaps = 5/184 (2%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDR+GEVILKKYSPIGELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDREGEVILKKYSPIGELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYA+SL E GHI I DRD+ IA+AG KK++L+K +G +E+VME RK +L N+ S Sbjct: 61 EYADSLHEAIGHIACIADRDNIIAVAGAPKKEFLDKPIGQAIERVMEERKPLL-ANSPSE 119 Query: 134 DI----GKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGK 189 D+ G+ ++ V APII+ GDPIG V+L S++ VKM ME+K+AETAA FL K Sbjct: 120 DLFPIDGEGEAYKFTAEVIAPIIAEGDPIGAVILCSREPGVKMGDMELKLAETAAGFLAK 179 Query: 190 QMEQ 193 QMEQ Sbjct: 180 QMEQ 183 >ref|NP_387937.1| transcriptional regulator [Bacillus subtilis] sp|P37554|SP5T_BACSU Stage V sporulation protein T pir||F69716 transcription regulator spoVT - Bacillus subtilis dbj|BAA05291.1| similar to AbrB [Bacillus subtilis] emb|CAB11832.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 178 Score = 238 bits (608), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 116/180 (64%), Positives = 141/180 (78%), Gaps = 2/180 (1%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPI ELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYA++L++ GH +I DRD +IA++G SKKDYL K + +LE+ M+ R +VLE++A S Sbjct: 61 EYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEMLERTMDQRSSVLESDAKSV 120 Query: 134 DIGKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGKQMEQ 193 + E ++SY PI++ GDPIG VV+ SKD + M ++E K ETAA FL +QMEQ Sbjct: 121 QLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQT--MGEVEHKAVETAAGFLARQMEQ 178 >ref|NP_654002.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_842622.1| stage V sporulation protein T [Bacillus anthracis str. Ames] gb|AAP24108.1| stage V sporulation protein T [Bacillus anthracis str. Ames] Length = 178 Score = 234 bits (597), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 117/180 (65%), Positives = 139/180 (77%), Gaps = 2/180 (1%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPI ELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYAE+L++ GH ++ DRDS IA++G SKK+YL K VG L+EK ME RK+V+ T+ Sbjct: 61 EYAEALYDSLGHNVLVCDRDSIIAVSGVSKKEYLNKSVGDLIEKTMEERKSVIMTDESDV 120 Query: 134 DIGKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGKQMEQ 193 I E V SY PI++ GDPIG V++ SK+ ++++E K TAA+FL KQMEQ Sbjct: 121 SIIDGVTEKVHSYTVGPIVANGDPIGAVIIFSKE--AIISEIEHKAVNTAASFLAKQMEQ 178 >ref|NP_829956.1| Stage V sporulation protein T [Bacillus cereus ATCC 14579] ref|NP_976380.1| stage V sporulation protein T [Bacillus cereus ATCC 10987] gb|AAP07157.1| Stage V sporulation protein T [Bacillus cereus ATCC 14579] gb|AAS38988.1| stage V sporulation protein T [Bacillus cereus ATCC 10987] Length = 178 Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 116/180 (64%), Positives = 139/180 (77%), Gaps = 2/180 (1%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPI ELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYA++L++ GH ++ DRDS IA++G SKK+YL K VG L+EK ME RK+V+ T+ Sbjct: 61 EYADALYDSLGHNVLVCDRDSIIAVSGVSKKEYLNKSVGDLIEKTMEERKSVIMTDESDI 120 Query: 134 DIGKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGKQMEQ 193 I E V SY PI++ GDPIG V++ SK+ ++++E K TAA+FL KQMEQ Sbjct: 121 SIIDGVTEKVHSYTVGPIVANGDPIGAVIIFSKE--AIISEIEHKAVNTAASFLAKQMEQ 178 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 274,407,564 Number of extensions: 11574938 Number of successful extensions: 25816 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 25805 Number of HSP's successfully gapped: 39 Length of query: 193 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 74 Effective length of database: 434,140,797 Effective search space: 32126418978 Effective search space used: 32126418978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 122 (51.6 bits)