BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0033.p (788 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_981525.1| ribonuclease R [Bacillus cereus ATCC 10987] >gi... 851 0.0 ref|NP_653554.1| RNB, RNB-like protein [Bacillus anthracis A2012... 850 0.0 ref|NP_834797.1| Exoribonuclease II [Bacillus cereus ATCC 14579]... 849 0.0 ref|NP_391241.1| similar to hypothetical proteins [Bacillus subt... 842 0.0 ref|NP_244420.1| ribonuclease R; virulence-associated protein [B... 816 0.0 >ref|NP_981525.1| ribonuclease R [Bacillus cereus ATCC 10987] gb|AAS44133.1| ribonuclease R [Bacillus cereus ATCC 10987] Length = 806 Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/714 (57%), Positives = 531/714 (74%), Gaps = 8/714 (1%) Query: 20 EQLLDFMRETAYKPLTYDELVSHFALEDXXXXXXXXXXXXXXXQDGRMILTRNARYGVPE 79 ++LL FMRE AYKPLT EL F +E + G +I TR+ RYG+PE Sbjct: 10 DKLLLFMREEAYKPLTIQELEEAFGIEGSEGFKDFVKALVTMEEKGLVIRTRSNRYGLPE 69 Query: 80 RMDLVRGRVQAHAKGFAFLIPDDRDHPD--IYMNANDLKGAMNGDIVLVRITSRSPSGGR 137 +M+LVRG++ HA+GFAF++PD++ D +++ +L GA++GD VL R++S+S SG R Sbjct: 70 KMNLVRGKLIGHARGFAFVVPDEKKTGDDDLFIPPTELNGALHGDTVLARLSSQS-SGSR 128 Query: 138 MEGEVVRIVKRGVLQTVGVFQSLENYGFVLPDDKRINRDIFIPKQSFKGAVDGEKVVVRI 197 EG +VRI++RG + VG + +N+GFV+PD+KR DIF+ K + GAV+G KVVV+I Sbjct: 129 QEGSIVRILERGTKELVGTYTESKNFGFVIPDNKRWTSDIFVLKSASMGAVEGHKVVVKI 188 Query: 198 VNYPXXXXXXXXXXXXXXXHKDDPGVDILSVIRKHQLPEAFPAEVMREAEQAPDSITEEE 257 +YP HK+DPGVDILSVI KH LP AFP EVM A P++I+EE+ Sbjct: 189 TSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPEEVMEHANSVPETISEED 248 Query: 258 IIQQGRRDLRGLNIVTIDGADAKDLDDAVNVSRLENGHYKLGVHIADVGYYVREGSELDK 317 + + RRDLR IVTIDGADAKDLDDAV V++LENG+YKLGVHIADV +YV+EGS +D Sbjct: 249 L--KDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPIDV 306 Query: 318 EAFDRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEFDEHMKVVKHDVFTSV 377 EA +R S+YLVDRVIPM+PHRLSNGICSLNPKVDRLT+SCEME + VVKH++F SV Sbjct: 307 EAAERATSIYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQSV 366 Query: 378 IRTKERMTYSDVRKIVEDEDPELLERYSPLIEDFRLMKELAMKLRGARMRRGAVDFDFEE 437 I+T ERMTY+DVR I+EDED EL++RY PL+ F+ M +LA LR RMRRGA+DFDF+E Sbjct: 367 IKTTERMTYADVRSILEDEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDFKE 426 Query: 438 SKIIVDENGKAIDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDPEK 497 +K++VDE GK D+V R+RSV+E++IEEFML ANETVAEHFHW+ VPF+YR+HEDP +K Sbjct: 427 AKVLVDEEGKPTDVVMRDRSVSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHEDPKEDK 486 Query: 498 LQNFMAFAANFGYHVKGRGNSVHPRALQDLLEQIQGTKEQTVISTMMLRSMKQAKYDAES 557 L+ F F NFGY VKGR N VHPRALQ +LE +QG E+ VIST+MLRSMKQA+YDAES Sbjct: 487 LERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQARYDAES 546 Query: 558 TGHFGLAAEFYSHFTSPIRRYPDLVIHRVMREVIENGGALTEKRHEYLASRMPEIAQQSS 617 GHFGL+ EFY+HFTSPIRRYPD ++HR++RE I NG E + ++ ++PEIA SS Sbjct: 547 LGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYIINGKVDNETQAKW-REKLPEIADHSS 605 Query: 618 XXXXXXXXXXXDTEQLKKAEFMQDKVGEEFDAMVSSVTSFGMFIELENTVEGLIRLSALS 677 +T+++KKAE+M DK+GEE+D M+SSVT+FG+F+EL NT+EGL+ +S L+ Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665 Query: 678 DDYYHFDEAHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMK--PR 729 DDYY +DE H A+IGERT VFRIGDE+ IRV VN D+ IDFE+V MK PR Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDERAIDFEIVGMKGTPR 719 >ref|NP_653554.1| RNB, RNB-like protein [Bacillus anthracis A2012] ref|NP_847510.1| ribonuclease R [Bacillus anthracis str. Ames] gb|AAP28996.1| ribonuclease R [Bacillus anthracis str. Ames] Length = 808 Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/714 (57%), Positives = 532/714 (74%), Gaps = 8/714 (1%) Query: 20 EQLLDFMRETAYKPLTYDELVSHFALEDXXXXXXXXXXXXXXXQDGRMILTRNARYGVPE 79 ++LL FMRE AYKPLT EL F +E + G +I TR+ RYG+PE Sbjct: 10 DKLLLFMREEAYKPLTIQELEEAFGIEGSEGFKDFVKALVTMEEKGLVIRTRSNRYGLPE 69 Query: 80 RMDLVRGRVQAHAKGFAFLIPDDRD--HPDIYMNANDLKGAMNGDIVLVRITSRSPSGGR 137 +M+L+RG++ HA+GFAF++PD++ D+++ +L GA++GD VL R++S+S SG R Sbjct: 70 KMNLIRGKLIGHARGFAFVVPDEKKTGDDDLFIPPTELNGALHGDTVLARLSSQS-SGSR 128 Query: 138 MEGEVVRIVKRGVLQTVGVFQSLENYGFVLPDDKRINRDIFIPKQSFKGAVDGEKVVVRI 197 EG +VRI++RG + VG + +N+GFV+PD+KR DIF+ K + GAV+G KVVV+I Sbjct: 129 QEGSIVRILERGTKELVGTYTESKNFGFVIPDNKRWTSDIFVLKSASMGAVEGHKVVVKI 188 Query: 198 VNYPXXXXXXXXXXXXXXXHKDDPGVDILSVIRKHQLPEAFPAEVMREAEQAPDSITEEE 257 +YP HK+DPGVDILSVI KH LP AFP EVM A P++I+EE+ Sbjct: 189 TSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPEEVMEHANSVPETISEED 248 Query: 258 IIQQGRRDLRGLNIVTIDGADAKDLDDAVNVSRLENGHYKLGVHIADVGYYVREGSELDK 317 + + RRDLR IVTIDGADAKDLDDAV V++LENG+YKLGVHIADV +YV+EGS +D Sbjct: 249 L--KDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPIDV 306 Query: 318 EAFDRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEFDEHMKVVKHDVFTSV 377 EA +R SVYLVDRVIPM+PHRLSNGICSLNPKVDRLT+SCEME + VVKH++F SV Sbjct: 307 EAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQSV 366 Query: 378 IRTKERMTYSDVRKIVEDEDPELLERYSPLIEDFRLMKELAMKLRGARMRRGAVDFDFEE 437 I+T ERMTY+DVR I+EDED EL++RY PL+ F+ M +LA LR RMRRGA+DFDF+E Sbjct: 367 IKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDFKE 426 Query: 438 SKIIVDENGKAIDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDPEK 497 +K++VDE GK D+V R+RSV+E++IEEFML ANETVAEHFHW+ VPF+YR+HEDP +K Sbjct: 427 AKVLVDEEGKPTDVVMRDRSVSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHEDPKEDK 486 Query: 498 LQNFMAFAANFGYHVKGRGNSVHPRALQDLLEQIQGTKEQTVISTMMLRSMKQAKYDAES 557 L+ F F NFGY VKGR N VHPRALQ +LE +QG E+ VIST+MLRSMKQA+YDA+S Sbjct: 487 LERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQARYDADS 546 Query: 558 TGHFGLAAEFYSHFTSPIRRYPDLVIHRVMREVIENGGALTEKRHEYLASRMPEIAQQSS 617 GHFGL+ EFY+HFTSPIRRYPD ++HR++RE I NG E + ++ ++PEIA+ SS Sbjct: 547 LGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYIINGKVDNETQAKW-REKLPEIAEHSS 605 Query: 618 XXXXXXXXXXXDTEQLKKAEFMQDKVGEEFDAMVSSVTSFGMFIELENTVEGLIRLSALS 677 +T++LKKAE+M DK+GEE+D M+SSVT+FG+F+EL NT+EGL+ +S L+ Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665 Query: 678 DDYYHFDEAHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMK--PR 729 DDYY +DE H A+IGERT VFRIGDE+ IRV VN D+ IDFE+V MK PR Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDERAIDFEIVGMKGTPR 719 >ref|NP_834797.1| Exoribonuclease II [Bacillus cereus ATCC 14579] gb|AAP11998.1| Exoribonuclease II [Bacillus cereus ATCC 14579] Length = 808 Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/714 (57%), Positives = 532/714 (74%), Gaps = 8/714 (1%) Query: 20 EQLLDFMRETAYKPLTYDELVSHFALEDXXXXXXXXXXXXXXXQDGRMILTRNARYGVPE 79 ++LL FMRE AYKPLT EL F +E + G +I TR+ RYG+PE Sbjct: 10 DKLLLFMREEAYKPLTIQELEEAFGIEGSEGFKDFVKALVTMEEKGLVIRTRSNRYGLPE 69 Query: 80 RMDLVRGRVQAHAKGFAFLIPDDRD--HPDIYMNANDLKGAMNGDIVLVRITSRSPSGGR 137 +M+L+RG++ HA+GFAF++PD++ D+++ +L GA++GD VL R++S+S SG R Sbjct: 70 KMNLIRGKLIGHARGFAFVVPDEKKTGDDDLFIPPTELNGALHGDTVLARLSSQS-SGSR 128 Query: 138 MEGEVVRIVKRGVLQTVGVFQSLENYGFVLPDDKRINRDIFIPKQSFKGAVDGEKVVVRI 197 EG +VRI++RG + VG + +N+GFV+PD+KR DIF+ K + GAV+G KVVV+I Sbjct: 129 QEGSIVRILERGTKELVGTYTESKNFGFVIPDNKRWTSDIFVLKSASMGAVEGHKVVVKI 188 Query: 198 VNYPXXXXXXXXXXXXXXXHKDDPGVDILSVIRKHQLPEAFPAEVMREAEQAPDSITEEE 257 +YP HK+DPGVDILSVI KH LP AFP EVM A P++I+EE+ Sbjct: 189 TSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPEEVMEHANSVPETISEED 248 Query: 258 IIQQGRRDLRGLNIVTIDGADAKDLDDAVNVSRLENGHYKLGVHIADVGYYVREGSELDK 317 + + RRDLR IVTIDGADAKDLDDAV V++LENG+YKLGVHIADV +YV+EGS +D Sbjct: 249 L--KDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPIDV 306 Query: 318 EAFDRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEFDEHMKVVKHDVFTSV 377 EA +R SVYLVDRVIPM+PHRLSNGICSLNPKVDRLT+SCEME + VVKH++F SV Sbjct: 307 EAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQSV 366 Query: 378 IRTKERMTYSDVRKIVEDEDPELLERYSPLIEDFRLMKELAMKLRGARMRRGAVDFDFEE 437 I+T ERMTY+DVR I+EDED EL++RY PL+ F+ M +LA LR RMRRGA+DFDF+E Sbjct: 367 IKTTERMTYADVRSILEDEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDFKE 426 Query: 438 SKIIVDENGKAIDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDPEK 497 +K++VDE GK D+V R+RSV+E++IEEFML ANETVAEHFHW+ VPF+YR+HEDP +K Sbjct: 427 AKVLVDEEGKPTDVVMRDRSVSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHEDPKEDK 486 Query: 498 LQNFMAFAANFGYHVKGRGNSVHPRALQDLLEQIQGTKEQTVISTMMLRSMKQAKYDAES 557 L+ F F NFGY VKGR N VHPRALQ +LE +QG E+ VIST+MLRSMKQA+YDA+S Sbjct: 487 LERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQARYDADS 546 Query: 558 TGHFGLAAEFYSHFTSPIRRYPDLVIHRVMREVIENGGALTEKRHEYLASRMPEIAQQSS 617 GHFGL+ EFY+HFTSPIRRYPD ++HR++RE I NG E + ++ ++PEIA+ SS Sbjct: 547 LGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYIINGKVDNETQAKW-REKLPEIAEHSS 605 Query: 618 XXXXXXXXXXXDTEQLKKAEFMQDKVGEEFDAMVSSVTSFGMFIELENTVEGLIRLSALS 677 +T+++KKAE+M DK+GEE+D M+SSVT+FG+F+EL NT+EGL+ +S L+ Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665 Query: 678 DDYYHFDEAHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMK--PR 729 DDYY +DE H A+IGERT VFRIGDE+ IRV VN D+ IDFE+V MK PR Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDERAIDFEIVGMKGTPR 719 >ref|NP_391241.1| similar to hypothetical proteins [Bacillus subtilis] sp|O32231|RNR_BACSU Ribonuclease R (RNase R) (VacB protein homolog) pir||G70027 conserved hypothetical protein yvaJ - Bacillus subtilis emb|CAB15366.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] Length = 779 Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/722 (55%), Positives = 524/722 (72%), Gaps = 9/722 (1%) Query: 20 EQLLDFMRETAYKPLTYDELVSHFALEDXXXXXXXXXXXXXXXQDGRMILTRNARYGVPE 79 E+LL FM+E AYKPLT EL + + + G ++ TR+ RYG+PE Sbjct: 8 EKLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEEKGLIVRTRSDRYGIPE 67 Query: 80 RMDLVRGRVQAHAKGFAFLIPDDRDHPDIYMNANDLKGAMNGDIVLVRITSRSPSGGRME 139 +M+L++G++ AHAKGFAFL+P+D D+++ N+L AMNGDIV+VR+ S+S SG R E Sbjct: 68 KMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS-SGSRQE 126 Query: 140 GEVVRIVKRGVLQTVGVFQSLENYGFVLPDDKRINRDIFIPKQSFKGAVDGEKVVVRIVN 199 G V+RI++R + + VG + N+GFV+PDDK+I DIFIPK GA +G KVVV++ + Sbjct: 127 GTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGHKVVVKLTS 186 Query: 200 YPXXXXXXXXXXXXXXXHKDDPGVDILSVIRKHQLPEAFPAEVMREAEQAPDSITEEEII 259 YP HK+DPG+DILSVI KH LP FPA+ M +A PD+I E+++ Sbjct: 187 YPEGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPDTIDEKDL- 245 Query: 260 QQGRRDLRGLNIVTIDGADAKDLDDAVNVSRLENGHYKLGVHIADVGYYVREGSELDKEA 319 + RRDLR IVTIDGADAKDLDDAV V++L++G YKLGVHIADV +YV E S +DKEA Sbjct: 246 -KDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPIDKEA 304 Query: 320 FDRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEFDEHMKVVKHDVFTSVIR 379 +RG SVYLVDRVIPM+PHRLSNGICSLNPKVDRLT+SCEM + +V +H++F SVI+ Sbjct: 305 LERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQSVIK 364 Query: 380 TKERMTYSDVRKIVEDEDPELLERYSPLIEDFRLMKELAMKLRGARMRRGAVDFDFEESK 439 T ERMTYSDV KI+ D+D EL ++Y PL+ F+ M+ LA LR RM RGAVDFDF+E+K Sbjct: 365 TTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFKEAK 424 Query: 440 IIVDENGKAIDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDPEKLQ 499 ++VD+ G D+V RERSVAE++IEEFML ANETVAEHFHW+ VPF+YRIHE+P+ EKLQ Sbjct: 425 VLVDDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNAEKLQ 484 Query: 500 NFMAFAANFGYHVKGRGNSVHPRALQDLLEQIQGTKEQTVISTMMLRSMKQAKYDAESTG 559 F+ F FGY VKG ++HPRALQ +L+ ++ E+TVIST+MLRSMKQAKYD +S G Sbjct: 485 KFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAKYDPQSLG 544 Query: 560 HFGLAAEFYSHFTSPIRRYPDLVIHRVMREVIENGGALTEKRHEYLASRMPEIAQQSSXX 619 HFGL+ EFY+HFTSPIRRYPDL++HR++R + N G + E E A R+P+IA+ +S Sbjct: 545 HFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIN-GKVDEATQEKWAERLPDIAEHTSSM 603 Query: 620 XXXXXXXXXDTEQLKKAEFMQDKVGEEFDAMVSSVTSFGMFIELENTVEGLIRLSALSDD 679 +T+ LKKAE+M DK+GEEFD M+SSVT+FGMF+EL NT+EGL+ +S ++DD Sbjct: 604 ERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFMTDD 663 Query: 680 YYHFDEAHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMK-----PRAAGEH 734 YY FDE H A+IGERT VFRIGDE+ ++V VN D+ IDFE+V MK PR Sbjct: 664 YYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIVGMKGTPRRPRELDSS 723 Query: 735 RS 736 RS Sbjct: 724 RS 725 >ref|NP_244420.1| ribonuclease R; virulence-associated protein [Bacillus halodurans] pir||A84094 virulence-associated protein BH3553 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07272.1| ribonuclease R [Bacillus halodurans] Length = 771 Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/710 (56%), Positives = 519/710 (73%), Gaps = 4/710 (0%) Query: 20 EQLLDFMRETAYKPLTYDELVSHFALEDXXXXXXXXXXXXXXXQDGRMILTRNARYGVPE 79 +QLL F RE A KPL+ +EL LED + G ++ TR+ RYGVPE Sbjct: 7 QQLLMFFREQAEKPLSVNELEEALNLEDAQEFKELVQVLNEMEEKGLLVRTRSNRYGVPE 66 Query: 80 RMDLVRGRVQAHAKGFAFLIPDDRDHPDIYMNANDLKGAMNGDIVLVRITSRSPSGGRME 139 +M+L+RG VQ HAKGFAF+IP++ H D+Y++ DL+ AMNGD V+VR+ S +G R E Sbjct: 67 KMNLLRGVVQGHAKGFAFVIPEEEGHSDVYVSHVDLESAMNGDRVIVRLHPHS-TGTRPE 125 Query: 140 GEVVRIVKRGVLQTVGVFQSLENYGFVLPDDKRINRDIFIPKQSFKGAVDGEKVVVRIVN 199 G+V+RI++RGV + +G + + YG V+ DDKRI DI I +G VDG KV+V+I Sbjct: 126 GKVIRILERGVSEVIGTYVDHQTYGLVVADDKRIPNDILIVNPEAQGLVDGHKVIVKITK 185 Query: 200 YPXXXXXXXXXXXXXXXHKDDPGVDILSVIRKHQLPEAFPAEVMREAEQAPDSITEEEII 259 YP HK+DPG+DILS+I K+ +P+AFP EV+++A+ PD I EI Sbjct: 186 YPEGRMSAEGEVISILGHKNDPGMDILSIIYKYGIPQAFPEEVLQQAQNIPDEIDAGEI- 244 Query: 260 QQGRRDLRGLNIVTIDGADAKDLDDAVNVSRLENGHYKLGVHIADVGYYVREGSELDKEA 319 + RRDLR +VTIDGADAKDLDDAV+VSRL NG++KLGVHIADV YYV+E S +D EA Sbjct: 245 -KNRRDLRDEPLVTIDGADAKDLDDAVHVSRLPNGNFKLGVHIADVSYYVKEKSPIDLEA 303 Query: 320 FDRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEFDEHMKVVKHDVFTSVIR 379 +RG SVYLVDRVIPM+PHRLSNGICSLNP+VDRLT+SCEME +VV H++F SVIR Sbjct: 304 AERGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEITRDGQVVNHEIFQSVIR 363 Query: 380 TKERMTYSDVRKIVEDEDPELLERYSPLIEDFRLMKELAMKLRGARMRRGAVDFDFEESK 439 T ERMTY DV KI+ +++ EL RY L+ F M+ELA LR R RGA+DFDF+E+K Sbjct: 364 TNERMTYHDVNKILVEKEEELRNRYELLVPMFEDMEELAAILRKKRFGRGAIDFDFKEAK 423 Query: 440 IIVDENGKAIDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDPEKLQ 499 ++VDE GK D+V RER VAE++IEEFMLAANETVAEHFHWLK+PF+YRIHEDPD EKL Sbjct: 424 VLVDEEGKPSDVVIRERGVAEKLIEEFMLAANETVAEHFHWLKLPFMYRIHEDPDSEKLG 483 Query: 500 NFMAFAANFGYHVKGRGNSVHPRALQDLLEQIQGTKEQTVISTMMLRSMKQAKYDAESTG 559 F+ F NFGY V+G N+VHPRALQ LLE+++G E+ VIST+MLRSM+QAKYD S G Sbjct: 484 RFLEFITNFGYVVRGTANTVHPRALQKLLEEVRGEPEEQVISTVMLRSMQQAKYDPTSLG 543 Query: 560 HFGLAAEFYSHFTSPIRRYPDLVIHRVMREVIENGGALTEKRHEYLASRMPEIAQQSSXX 619 HFGL+ EFY+HFTSPIRRYPDL++HR++RE + G + E+ E R+PEIA+ S Sbjct: 544 HFGLSTEFYTHFTSPIRRYPDLIVHRLIREYLIKGN-VDEETQEKWRERLPEIARHCSEM 602 Query: 620 XXXXXXXXXDTEQLKKAEFMQDKVGEEFDAMVSSVTSFGMFIELENTVEGLIRLSALSDD 679 +T+ +KKA+FM+DK+GE F ++S VT+FG+F+ELENT+EGL+ +S L+DD Sbjct: 603 ERRAVDAERETDDVKKAQFMEDKIGETFTGIISGVTNFGIFVELENTIEGLVHVSYLTDD 662 Query: 680 YYHFDEAHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMKPR 729 YY +DE H A+IGER+ VFRIGDE+++RV VN+++ +IDFE+V MKPR Sbjct: 663 YYRYDEKHYAMIGERSGNVFRIGDEIEVRVINVNVEEASIDFEIVGMKPR 712 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,016,835,915 Number of extensions: 39950198 Number of successful extensions: 101113 Number of sequences better than 1.0e-05: 574 Number of HSP's gapped: 99560 Number of HSP's successfully gapped: 593 Length of query: 788 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 654 Effective length of database: 393,414,312 Effective search space: 257292960048 Effective search space used: 257292960048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)