BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0023.p (605 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244439.1| BH3572~unknown conserved protein in B. subtilis... 206 1e-51 ref|NP_391361.1| yvcD [Bacillus subtilis] >gi|7459507|pir||E7003... 188 4e-46 ref|NP_834824.1| TPR-repeat-containing protein [Bacillus cereus ... 173 1e-41 ref|NP_981556.1| TPR domain protein [Bacillus cereus ATCC 10987]... 171 6e-41 ref|NP_653606.1| hypothetical protein predicted by GeneMark [Bac... 169 2e-40 >ref|NP_244439.1| BH3572~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||D84096 hypothetical protein BH3572 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07291.1| BH3572~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 358 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 186/338 (55%), Gaps = 6/338 (1%) Query: 37 DVENGNVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHCNMAGILSE 96 D +IP ++FF R V + + +A+K +AV+ + PV H +A +LSE Sbjct: 6 DSGKKKIIPFIQSGDYFFRRGVIAFRKNHLSRAVKLLERAVKLTEQEPVFHIQLAAVLSE 65 Query: 97 MGKYEASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQEDANGEFIA 156 +G YE SNDIL V++ +DP +ECHF+MANNYA + FE+AE + YL + +GEF Sbjct: 66 LGHYERSNDILESVVQNLDPGHSECHFFMANNYAYLGLFEKAEHCAIAYLSDQPDGEFAK 125 Query: 157 ESEELMELLQYELNRPAPLVRIR---SREGVVEHDRARSLLEEGKFPQAVTLLEEIVQNI 213 ++ +L++LL++E + + ++EH++A LLEEG +A+ LLE+++ Sbjct: 126 DAHDLLDLLRFEKEEEGDEWENELTPTDQFLLEHEKACQLLEEGHLQEAIVLLEKLMDEE 185 Query: 214 PDFLAAHNNLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDREQLAGL 273 P + A+N A A F +G KA E + +L +D GNL ALCNMA+F + G ++Q L Sbjct: 186 PSYWTAYNQYAQALFRLGNVEKAFEVCEHILEEDQGNLFALCNMALFYKKQGQQQQAESL 245 Query: 274 VGMLEATVPFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGDASLYHYC-AAAAS 332 + L A P + H FK+A + +G + AY + L+ + D +H+C AA Sbjct: 246 IQALSAVHPMDRAHRFKVAQVLCAVGAYEQAYDRLKE-LEWTSISSDPE-WHFCIGVAAY 303 Query: 333 NSGFVSEAVRCWQMAAKLDPESAVPKFFLSQLQLAQAE 370 + G A+R W+ AA L + A + +S + + Q E Sbjct: 304 HLGQEEIALRYWKKAATLGVQQAADYYAMSIVDILQKE 341 >ref|NP_391361.1| yvcD [Bacillus subtilis] pir||E70031 hypothetical protein yvcD - Bacillus subtilis emb|CAB08052.1| hypothetical protein [Bacillus subtilis] emb|CAB15486.1| yvcD [Bacillus subtilis subsp. subtilis str. 168] Length = 484 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 115/356 (32%), Positives = 183/356 (51%), Gaps = 19/356 (5%) Query: 29 MIERTSENDVENGNVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHC 88 M + TSE+ + ++ + D +FF + +++ +A K ++AV EPE+ Sbjct: 1 MGKHTSEHK-NHAQIVQLLQDGQYFFHKGLKAYKERNLKRASKLIQRAVHLEPEDSEMLS 59 Query: 89 NMAGILSEMGKYEASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQE 148 +A I SEMG+Y+ SND+L +++ ++ M ECH++ ANN+A++ F+EA + Y Sbjct: 60 QLAVIYSEMGQYQESNDLLDYIMANLEAEMPECHYFKANNFAHLGLFQEAYKEAAAYSDA 119 Query: 149 DANGEFIAESEELMELLQYELNRPAPLVRIRSREGVVEHDRARSLLEEGKFPQAVTLLEE 208 D +GEF AE + + L + E +V+ DRA+SLLE G+ +AV LEE Sbjct: 120 DPDGEF-AEENDSLLDLLDLGDDGIEDSLYDQDELLVKQDRAKSLLESGQLAEAVAALEE 178 Query: 209 IVQNIPDFLAAHNNLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDRE 268 I P+ +A+NNLALAYFY G KAK+ EVL+ + GNLHALCN+ +F Y + E Sbjct: 179 ITTEYPELWSAYNNLALAYFYSGNVVKAKQTAYEVLSHNEGNLHALCNLLVFYYYEREDE 238 Query: 269 QLAGLVGMLEATVPFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGDASLYHYCA 328 ++A L L P E +K+ T+ ++G++ Y + L K GD + +++ + Sbjct: 239 KVAELSDQLSNVYPMLLEQRYKLGATLALVGRYEIGYKWLKSLYKT-GFEGDDTFFYWLS 297 Query: 329 AAASNSGFVSEAVRCWQMAAKLDPESAVPKFFLSQLQLAQAEGRPLPPVSYNYQLP 384 +A +G A W+ ES P E RP P + LP Sbjct: 298 CSAYFTGHTDFAETIWRKV-----ESQYP-----------GEDRPAPWIERREALP 337 >ref|NP_834824.1| TPR-repeat-containing protein [Bacillus cereus ATCC 14579] gb|AAP12025.1| TPR-repeat-containing protein [Bacillus cereus ATCC 14579] Length = 503 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 172/315 (54%), Gaps = 5/315 (1%) Query: 39 ENGNVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHCNMAGILSEMG 98 ENG VI A+FF+++ +R+ + A+K FR+A + E E P C +A +LSE G Sbjct: 10 ENGQVISFNQLADFFYKKGMRAYKGQKLQDAIKYFRRAAQSEKE-PFILCQLATVLSEAG 68 Query: 99 KYEASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQEDANGEFIAES 158 +Y+ SN ++ +P + +C++++ANNYA M F++A++ YL+ EF+ ++ Sbjct: 69 EYQESNQTFLKLVRS-NPELEQCYYFIANNYAYMGLFQQAKKYADRYLEVAKEKEFVEDT 127 Query: 159 EELMELLQYELNRPAPLVRIRSREGVVEHDRARSLLEEGKFPQAVTLLEEIVQNIPDFLA 218 EL+E+++ + +V + A + G+ +A+ LE + ++ P+F + Sbjct: 128 LELLEIME--EEAMGAEEIEDEDDLIVMQEEANRYIRNGQLEEAIATLEIVTKDYPEFWS 185 Query: 219 AHNNLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDREQLAGLVGMLE 278 HNNLA+A+F G KA + + +L ++PGN+HALCN IFL G+ +Q+ L G L Sbjct: 186 GHNNLAIAHFQSGNVDKALKLTEMILEKNPGNIHALCNTLIFLYSIGEHKQVEALAGQLV 245 Query: 279 ATVPFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGDASLYHYCAAAASNSGFVS 338 + P EH K+ TT+ +G AY F +LLK + GD S Y++ A +A Sbjct: 246 SVYPISFEHRLKLGTTLATIGYFEHAYKWF-KLLKRQGYEGDVSFYYWFAYSAYMVKDQQ 304 Query: 339 EAVRCWQMAAKLDPE 353 A + WQ +L P+ Sbjct: 305 LAEKMWQYVVELHPD 319 >ref|NP_981556.1| TPR domain protein [Bacillus cereus ATCC 10987] gb|AAS44164.1| TPR domain protein [Bacillus cereus ATCC 10987] Length = 528 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 171/315 (54%), Gaps = 5/315 (1%) Query: 39 ENGNVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHCNMAGILSEMG 98 ENG VI A+FF+++ +R+ + A+K FR+A + E E P C +A +LSE G Sbjct: 35 ENGQVISFNQLADFFYKKGMRAYKGQKLQDAIKYFRRAAQSEKE-PFILCQLATVLSEAG 93 Query: 99 KYEASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQEDANGEFIAES 158 +Y+ SN ++ +P + +C++++ANNYA M F++A++ YL+ EF+ ++ Sbjct: 94 EYQESNQTFFKLVRS-NPELEQCYYFIANNYAYMGLFQQAKKYADRYLEVAEEKEFVEDT 152 Query: 159 EELMELLQYELNRPAPLVRIRSREGVVEHDRARSLLEEGKFPQAVTLLEEIVQNIPDFLA 218 EL+E+++ + +V + A + G+ +A+ LE + ++ P+F + Sbjct: 153 LELLEIME--EEAMGAEEIEDEDDLIVMQEEANRYIRNGQLEEAIATLEIVTKDYPEFWS 210 Query: 219 AHNNLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDREQLAGLVGMLE 278 HNNLA+A+F G KA + + +L ++PGN+HALCN IFL G+ +Q+ L L Sbjct: 211 GHNNLAIAHFQSGNVDKALKLTEMILEKNPGNIHALCNTLIFLYSIGEHKQVEALAAQLV 270 Query: 279 ATVPFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGDASLYHYCAAAASNSGFVS 338 + P EH K+ TT+ +G AY F +LLK + GD S Y++ A +A Sbjct: 271 SVYPISFEHRLKLGTTLATIGHFEPAYKWF-KLLKRQGYEGDVSFYYWFAYSAYMVKDQQ 329 Query: 339 EAVRCWQMAAKLDPE 353 A + WQ +L P+ Sbjct: 330 VAEKMWQHVVELHPD 344 >ref|NP_653606.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847561.1| TPR domain protein [Bacillus anthracis str. Ames] gb|AAP29047.1| TPR domain protein [Bacillus anthracis str. Ames] Length = 503 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 171/315 (54%), Gaps = 5/315 (1%) Query: 39 ENGNVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHCNMAGILSEMG 98 ENG VI A+FF+++ +R+ + A+K FR+A + E E P C +A +LSE G Sbjct: 10 ENGQVISFNQLADFFYKKGMRAYKGQKLQDAIKYFRRAAQSEKE-PFILCQLATVLSEAG 68 Query: 99 KYEASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQEDANGEFIAES 158 +Y+ SN ++ +P + +C++++ANNYA M F++A++ YL+ EF+ ++ Sbjct: 69 EYQESNQTFFKLVRS-NPELEQCYYFIANNYAYMGLFQQAKKYADRYLEVAEEKEFVEDT 127 Query: 159 EELMELLQYELNRPAPLVRIRSREGVVEHDRARSLLEEGKFPQAVTLLEEIVQNIPDFLA 218 EL+E+++ + +V + A + G+ +A+ LE + ++ P+F + Sbjct: 128 LELLEIME--EEAMGAEEIEDEDDLIVMQEEANRYIRNGQLEEAIATLEIVTKDYPEFWS 185 Query: 219 AHNNLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDREQLAGLVGMLE 278 HNNLA+A+F G KA + + +L ++PGN+HALCN IFL G+ +Q+ L L Sbjct: 186 GHNNLAIAHFQSGNVDKALKLTEMILDKNPGNIHALCNTLIFLYSIGEHKQVEVLAAQLV 245 Query: 279 ATVPFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGDASLYHYCAAAASNSGFVS 338 A P EH K+ TT+ +G AY F ++LK + GD S Y++ A +A Sbjct: 246 AVYPISFEHRLKLGTTLATIGHFEHAYKWF-KVLKRQGYEGDVSFYYWFAYSAYMVKDQQ 304 Query: 339 EAVRCWQMAAKLDPE 353 A + WQ +L P+ Sbjct: 305 VAEKMWQHVVELHPD 319 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 904,284,278 Number of extensions: 37354129 Number of successful extensions: 103353 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 103354 Number of HSP's successfully gapped: 84 Length of query: 605 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 473 Effective length of database: 398,844,510 Effective search space: 188653453230 Effective search space used: 188653453230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)