BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0022.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAI66825.1| unknown [environmental sequence] 362 5e-99 gb|EAI18827.1| unknown [environmental sequence] 355 6e-97 gb|EAI78196.1| unknown [environmental sequence] 353 2e-96 gb|EAK31807.1| unknown [environmental sequence] 350 2e-95 ref|ZP_00057060.1| COG0492: Thioredoxin reductase [Thermobifida ... 349 4e-95 >gb|EAI66825.1| unknown [environmental sequence] Length = 314 Score = 362 bits (930), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 176/309 (56%), Positives = 223/309 (72%), Gaps = 2/309 (0%) Query: 1 MYKTIVIGTGPAGLTAAIYLARANLSPLVIEGLQPGGQLXXXXEVENFPGFPDGILGPDL 60 ++KTI+IG+GPAGLTAAIY RANL P+V EG QPGGQL +VENFPGFPDG++GPD+ Sbjct: 6 IHKTIIIGSGPAGLTAAIYAGRANLKPIVFEGNQPGGQLTITTDVENFPGFPDGVMGPDM 65 Query: 61 MDNMRKQAERFGAQFKNGWVEAVDFSQRPFKITVDGLGVLEAETVIISTGASARYLGIPG 120 MD R QA++FGA+ V VDFS P+K+ V G +ETVIISTGASAR LG+ Sbjct: 66 MDLFRDQAKKFGAECHFKHVTKVDFSSTPYKVFV-GEEEFLSETVIISTGASARMLGLKE 124 Query: 121 EQDNVGRGVSTCATCDGFFFRGKKIVVVGGGDSAMEEASFLTRFASSVTLVHRRSELRAS 180 E+ +G G+STCATCDG+FF+ K IVVVGGGDSAMEEASFLT+FA VT++HRR +AS Sbjct: 125 EEQLMGYGISTCATCDGYFFKEKNIVVVGGGDSAMEEASFLTKFAKKVTIIHRREVFKAS 184 Query: 181 KIMQDRVRENSKVAWALNRTPLEV-AIGDTGVKGLKVRNNETGAEELVEADGVFVAIGHT 239 KIM DRVR N + +N++ + G+ + +++ +G E +GVF IGHT Sbjct: 185 KIMLDRVRNNPLIDIVVNKSIESIKGTQQDGISSIVLKDTVSGESSTFECEGVFYGIGHT 244 Query: 240 PNTAFLGGQITTDANGYIVVNPGTTETNIPGVFACGDVQDTRYRQAISAAGTGCMAAMDA 299 PNT G I + NGYI+ ++ TNIPGVFACGDVQD YRQAI+AAG+GCMAA+DA Sbjct: 245 PNTDLFKGMIDLNDNGYIITQSDSSLTNIPGVFACGDVQDDHYRQAITAAGSGCMAAIDA 304 Query: 300 EKYLEGSMV 308 EKYLE +++ Sbjct: 305 EKYLEENII 313 >gb|EAI18827.1| unknown [environmental sequence] Length = 312 Score = 355 bits (912), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 175/306 (57%), Positives = 222/306 (72%), Gaps = 4/306 (1%) Query: 1 MYKTIVIGTGPAGLTAAIYLARANLSPLVIEGLQPGGQLXXXXEVENFPGFPDGILGPDL 60 ++ TI+IG+GPAGLTAAIY RANL P+V EG QPGGQL +VENFPGFP+G++GP + Sbjct: 6 IHNTIIIGSGPAGLTAAIYAGRANLKPIVFEGNQPGGQLTITTDVENFPGFPNGVMGPKM 65 Query: 61 MDNMRKQAERFGAQFKNGWVEAVDFSQRPFKITVDGLGVLEAETVIISTGASARYLGIPG 120 MD R QA+RFGA+ V VDFS +P+K+ V L +ETVIISTGASAR LG+ Sbjct: 66 MDLFRDQAKRFGAECFFKHVTKVDFSSKPYKVYVGDEEFL-SETVIISTGASARMLGLKE 124 Query: 121 EQDNVGRGVSTCATCDGFFFRGKKIVVVGGGDSAMEEASFLTRFASSVTLVHRRSELRAS 180 E++ +G G+STCATCDG+FF+ K IVVVGGGDSAMEEASFLT+FA VT++HRR +AS Sbjct: 125 EEELMGYGISTCATCDGYFFKDKNIVVVGGGDSAMEEASFLTKFAKKVTIIHRREVFKAS 184 Query: 181 KIMQDRVRENSKVAWALNRTPLEVAIGDT--GVKGLKVRNNETGAEELVEADGVFVAIGH 238 KIM DRV+ N + +N++ ++ IG GV + + + +G + + +GVF IGH Sbjct: 185 KIMLDRVKNNPLIDIMVNKS-IDSIIGSQKEGVSSIVLNDTVSGEKTTFKCEGVFYGIGH 243 Query: 239 TPNTAFLGGQITTDANGYIVVNPGTTETNIPGVFACGDVQDTRYRQAISAAGTGCMAAMD 298 PNT G I D NGYI+ P ++ TNIPGVFACGDVQD YRQAI+AAG+GCMAA+D Sbjct: 244 NPNTDLFDGVIDLDDNGYIITKPDSSLTNIPGVFACGDVQDDHYRQAITAAGSGCMAAID 303 Query: 299 AEKYLE 304 EKYLE Sbjct: 304 TEKYLE 309 >gb|EAI78196.1| unknown [environmental sequence] Length = 310 Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 174/304 (57%), Positives = 221/304 (72%), Gaps = 4/304 (1%) Query: 3 KTIVIGTGPAGLTAAIYLARANLSPLVIEGLQPGGQLXXXXEVENFPGFPDGILGPDLMD 62 K I+IG+GPAGLTAA Y ARANL PLV EG+QPGGQL +VEN+PGFPDGI+GPDLMD Sbjct: 4 KVIIIGSGPAGLTAATYAARANLEPLVFEGVQPGGQLTITTDVENYPGFPDGIMGPDLMD 63 Query: 63 NMRKQAERFGAQFKNGWVEAVDFSQRPFKITVDGLGVLEAETVIISTGASARYLGIPGEQ 122 R QA+RFGA+ V VD PFK+ V ++++II+TGA+A+ LG+ E+ Sbjct: 64 KFRDQAKRFGAECYFKHVTKVDLESNPFKVWV-ADETFTSDSIIIATGATAKLLGLESEK 122 Query: 123 DNVGRGVSTCATCDGFFFRGKKIVVVGGGDSAMEEASFLTRFASSVTLVHRRSELRASKI 182 + +G GVS CATCDGFFF+ KK+ V+GGGDSAMEEASFLT+FAS V ++HRR+ELRASKI Sbjct: 123 NLMGHGVSACATCDGFFFKDKKVFVIGGGDSAMEEASFLTKFASEVQIIHRRNELRASKI 182 Query: 183 MQDRVRENSKVAWALNRTPLEVAIG--DTGVKGLKVRNNETGAEELVEADGVFVAIGHTP 240 MQDRV N K+ N T LE G D GV + +++ +G E DGVF+AIGHTP Sbjct: 183 MQDRVLNNPKIHIQWN-TTLEDIKGNVDDGVSAVILKDIISGDIRSEECDGVFLAIGHTP 241 Query: 241 NTAFLGGQITTDANGYIVVNPGTTETNIPGVFACGDVQDTRYRQAISAAGTGCMAAMDAE 300 NT + D YI + +T+T++PG+FACGDVQD+ YRQA++AAG+GCMAA+DAE Sbjct: 242 NTELFDNFLNLDEKKYICTDDNSTKTSVPGIFACGDVQDSIYRQAVTAAGSGCMAAIDAE 301 Query: 301 KYLE 304 +YLE Sbjct: 302 RYLE 305 >gb|EAK31807.1| unknown [environmental sequence] Length = 312 Score = 350 bits (899), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 172/306 (56%), Positives = 221/306 (72%), Gaps = 4/306 (1%) Query: 1 MYKTIVIGTGPAGLTAAIYLARANLSPLVIEGLQPGGQLXXXXEVENFPGFPDGILGPDL 60 ++KTI+IG+GPAGLT+AIY RANL P+V EG QPGGQL +VEN+PGFP+G++GP++ Sbjct: 6 IHKTIIIGSGPAGLTSAIYAGRANLKPIVFEGNQPGGQLTITTDVENYPGFPNGVMGPEM 65 Query: 61 MDNMRKQAERFGAQFKNGWVEAVDFSQRPFKITVDGLGVLEAETVIISTGASARYLGIPG 120 MD R QA++FGA+ V VDFS +P+K+ V G +ET+IISTGASAR LG+ Sbjct: 66 MDLFRDQAKKFGAECFFKHVTKVDFSSKPYKVFV-GDDEFLSETIIISTGASARMLGLKE 124 Query: 121 EQDNVGRGVSTCATCDGFFFRGKKIVVVGGGDSAMEEASFLTRFASSVTLVHRRSELRAS 180 E + +G G+STCATCDG+FF+ K IVVVGGGDSAMEEASFLT+FA VT++HRR +AS Sbjct: 125 EDELMGYGISTCATCDGYFFKDKNIVVVGGGDSAMEEASFLTKFAKKVTIIHRREVFKAS 184 Query: 181 KIMQDRVRENSKVAWALNRTPLEVAIGDT--GVKGLKVRNNETGAEELVEADGVFVAIGH 238 KIM DR + N + +N++ +E G GV + +R+ T + +GVF IGH Sbjct: 185 KIMLDRAKNNPLIDIIVNKS-IESINGSQKDGVSSVILRDTITEQKSTFNCEGVFYGIGH 243 Query: 239 TPNTAFLGGQITTDANGYIVVNPGTTETNIPGVFACGDVQDTRYRQAISAAGTGCMAAMD 298 PNT G I + NGYI+ P +T TNIPGVFACGDVQD YRQAI+AAG+GCM+A+D Sbjct: 244 NPNTELFKGIIDLNDNGYIITKPDSTLTNIPGVFACGDVQDDHYRQAITAAGSGCMSAID 303 Query: 299 AEKYLE 304 AEKYLE Sbjct: 304 AEKYLE 309 >ref|ZP_00057060.1| COG0492: Thioredoxin reductase [Thermobifida fusca] Length = 310 Score = 349 bits (896), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 176/300 (58%), Positives = 214/300 (71%), Gaps = 3/300 (1%) Query: 5 IVIGTGPAGLTAAIYLARANLSPLVIEG-LQPGGQLXXXXEVENFPGFPDGILGPDLMDN 63 I+IG+GPAG TAAIY ARA L PLV EG + GG L EVENFPGFPDGI+GP+LMDN Sbjct: 8 IIIGSGPAGYTAAIYAARAELKPLVFEGAITAGGALMNTTEVENFPGFPDGIMGPELMDN 67 Query: 64 MRKQAERFGAQFKNGWVEAVDFSQRPFKITVDGLGVLEAETVIISTGASARYLGIPGEQD 123 MRKQAERFGA+ V VD + P K+ G A VI++TG+ R LG+PGE++ Sbjct: 68 MRKQAERFGAELVPEDVTEVDLTANP-KVVKAGDQTFYARAVIVATGSGYRKLGVPGEEE 126 Query: 124 NVGRGVSTCATCDGFFFRGKKIVVVGGGDSAMEEASFLTRFASSVTLVHRRSELRASKIM 183 GRG S CATCDGFFFR + I VVGGGDSAMEEA FLTRFA SVT++HRR +LRASKIM Sbjct: 127 FSGRGTSWCATCDGFFFRDQDIAVVGGGDSAMEEAIFLTRFARSVTVIHRRDQLRASKIM 186 Query: 184 QDRVRENSKVAWALNRTPLEVAIGDTGVKGLKVRNNETGAEELVEADGVFVAIGHTPNTA 243 Q+R N K+++ N +E+ +GDT V +++RN TG E + G+F+AIGH P Sbjct: 187 QERAFANEKISFLWNTEVVEI-LGDTRVHAVRLRNRVTGEESTLNISGLFIAIGHDPRVE 245 Query: 244 FLGGQITTDANGYIVVNPGTTETNIPGVFACGDVQDTRYRQAISAAGTGCMAAMDAEKYL 303 GQ+ D GY+ V+ TT TNIPGVFACGDV D RYRQAI+AAG+GC AA+DAE+YL Sbjct: 246 LFKGQLELDEQGYLKVDSPTTHTNIPGVFACGDVVDHRYRQAITAAGSGCAAALDAERYL 305 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 472,943,906 Number of extensions: 19698162 Number of successful extensions: 70853 Number of sequences better than 1.0e-05: 1665 Number of HSP's gapped: 69107 Number of HSP's successfully gapped: 1666 Length of query: 317 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 192 Effective length of database: 417,850,203 Effective search space: 80227238976 Effective search space used: 80227238976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)