BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0020.p
         (74 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_267767.1| hypothetical protein L54040 [Lactococcus lactis...    67   2e-10
ref|NP_721538.1| conserved hypothetical protein [Streptococcus m...    62   5e-09
ref|NP_964155.1| hypothetical protein LJ0139 [Lactobacillus john...    55   4e-07
ref|ZP_00046950.1| COG2151: Predicted metal-sulfur cluster biosy...    54   1e-06

>ref|NP_267767.1| hypothetical protein L54040 [Lactococcus lactis subsp. lactis]
 pir||C86826 hypothetical protein yqfB [imported] - Lactococcus lactis subsp.
          lactis (strain IL1403)
 gb|AAK05709.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis]
          Length = 79

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 46/68 (67%)

Query: 5  LNMDESIFELVSRYPEVVDIMVELGFRDITKPGMLQTAGRFMTLSKGITMKKMNREIVRQ 64
          L+++  +++L + +PE++D+M +LGF +I  PGMLQTAGR  T+  G  MK ++ + +  
Sbjct: 4  LDINAKLYDLATEHPEIIDLMDDLGFHEIKMPGMLQTAGRMATIPMGAKMKHIDWDKIVI 63

Query: 65 AFERHGFE 72
          AF   GFE
Sbjct: 64 AFAEAGFE 71


>ref|NP_721538.1| conserved hypothetical protein [Streptococcus mutans UA159]
 gb|AAN58844.1| conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 77

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%)

Query: 1  MSKGLNMDESIFELVSRYPEVVDIMVELGFRDITKPGMLQTAGRFMTLSKGITMKKMNRE 60
          M+  +++ + + + +  +PEV DI+VELGF+ +  P ML T G+  TL  G  M ++  E
Sbjct: 1  MNNTIDLSKPVAQTIKEHPEVKDILVELGFKPLANPAMLNTVGKVTTLLAGSKMARIPLE 60

Query: 61 IVRQAFERHGFEIM 74
           ++Q  E +G+E++
Sbjct: 61 KIKQTLEFNGYEVI 74


>ref|NP_964155.1| hypothetical protein LJ0139 [Lactobacillus johnsonii NCC 533]
 gb|AAS08121.1| hypothetical protein LJ0139 [Lactobacillus johnsonii NCC 533]
          Length = 196

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 10  SIFELVSRYPEVVDIMVELGFRDITKPGMLQTAGRFMTLSKGITMKKMNREIVRQAFERH 69
            I +L   YP+ + IM + GF  I  PG+L T GR MT+  G    K++ + V+QAFE  
Sbjct: 131 PIKKLAEEYPDFIQIMYDCGFTRIKIPGLLSTVGRVMTIPLGAQAMKIDLDKVKQAFEDK 190

Query: 70  GFEIM 74
           G++++
Sbjct: 191 GYKVI 195


>ref|ZP_00046950.1| COG2151: Predicted metal-sulfur cluster biosynthetic enzyme
           [Lactobacillus gasseri]
          Length = 200

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query: 11  IFELVSRYPEVVDIMVELGFRDITKPGMLQTAGRFMTLSKGITMKKMNREIVRQAFERHG 70
           I +L   YP+ V IM + GF  I  PG+L T GR MT+  G    K++ + +++AFE  G
Sbjct: 135 IKKLAEEYPDFVQIMYDCGFTRIKIPGLLSTVGRVMTIPLGAQAMKIDLDKIKRAFENKG 194

Query: 71  FEIM 74
           ++++
Sbjct: 195 YKVI 198


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.139    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 92,982,640
Number of extensions: 2660276
Number of successful extensions: 9919
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9919
Number of HSP's successfully gapped: 4
Length of query: 74
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 30
Effective length of database: 637,773,222
Effective search space: 19133196660
Effective search space used: 19133196660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)