BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0013.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_643081.1| outer membrane protein [Xanthomonas axonopodis ... 75 8e-13 pir||S62202 hypothetical protein 1 - Methanosarcina barkeri >gi|... 75 1e-12 ref|ZP_00078591.1| COG2968: Uncharacterized conserved protein [M... 75 1e-12 ref|NP_633595.1| conserved protein [Methanosarcina mazei Goe1] >... 75 1e-12 ref|NP_637959.1| outer membrane protein [Xanthomonas campestris ... 75 1e-12 >ref|NP_643081.1| outer membrane protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM37617.1| outer membrane protein [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 11/212 (5%) Query: 18 VVSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXXXTLLKTTWGIADKDIQ 77 +++V + E PD+ LS GV AA A +K GIADKD+Q Sbjct: 38 LLNVSAEAEAKRVPDIATLSAGVVTQAADGNAAMRQNAEQMSKVMAAVKAA-GIADKDVQ 96 Query: 78 STQFIVQPNYTYSEKEGQQIKGYIAQHSLKVTYRDLNKVGQLLDXXXXXXXXXXXXTQFA 137 ++ + P YTY E E +I GY A +++ + RD+ ++G++LD F+ Sbjct: 97 TSGINLSPQYTYKENEAPKINGYQASNTVSLKVRDITRLGKVLDALVAQGANDINGPSFS 156 Query: 138 IENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLG----QVITVTQNDDGNNPVVYMENA 193 I+ P V ++A +SLG +++++++ G M A Sbjct: 157 IDQPE----PVYDEARVAALKKAQARADTYAKSLGLKVRRIVSISEGRSGGAVRPMMMAA 212 Query: 194 AMAKSVADAAGGTYVEPGEVRVSTQLSVMYEL 225 +M + A+ T V PGE +S L V +EL Sbjct: 213 SMRSAKAEM--DTPVAPGESTLSINLDVTFEL 242 >pir||S62202 hypothetical protein 1 - Methanosarcina barkeri emb|CAA63634.1| orf1 [Methanosarcina barkeri] gb|AAC44431.1| orf2 gene product prf||2206350K ORF 1 Length = 251 Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 10/221 (4%) Query: 11 AEDVQRNVVSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXXXTLLKTTWG 70 +E N +S+ G E + PD L+IGV + +A+EA LK G Sbjct: 36 SEKDTENTISISGYAEQKVIPDTATLNIGVVVQSETAKEATDKNAALMSSVIAELKA-IG 94 Query: 71 IADKDIQSTQFIVQPNYTYSEKEGQQIKGYIAQHSLKVTYRDLNKVGQLLDXXXXXXXXX 130 + DK+IQ+ V P Y Y + Q IKGY A +S++VT ++L+ + ++D Sbjct: 95 LQDKEIQTAYVSVSPVYNYDANDTQTIKGYSASNSVQVTTKNLDNLSDIIDRSTAAGANE 154 Query: 131 XXXTQFAIENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLGQVITVTQN-----DDGNN 185 F++ + + Q+ E M +SLG IT Q + G+ Sbjct: 155 IGSISFSVSDDK--QKQLREDLMNEAVSDASSKATTLAKSLGTKITGVQTSSVSENSGSR 212 Query: 186 PVVYMENAAMAKSVADAAGGTYVEPGEVRVSTQLSVMYELK 226 + + A AK AG T ++PGE VS + V Y +K Sbjct: 213 AIYEYDMATTAKGA--GAGSTPIQPGESTVSMSVQVTYYIK 251 >ref|ZP_00078591.1| COG2968: Uncharacterized conserved protein [Methanosarcina barkeri] Length = 253 Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 10/221 (4%) Query: 11 AEDVQRNVVSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXXXTLLKTTWG 70 +E N +S+ G E + PD L+IGV + +A+EA LK G Sbjct: 38 SEKDTENTISISGYAEQKVIPDTATLNIGVVVQSETAKEATDKNAALMSSVIAELKA-IG 96 Query: 71 IADKDIQSTQFIVQPNYTYSEKEGQQIKGYIAQHSLKVTYRDLNKVGQLLDXXXXXXXXX 130 + DK+IQ+ V P Y Y + Q IKGY A +S++VT ++L+ + ++D Sbjct: 97 LQDKEIQTAYVSVSPVYNYDANDTQTIKGYSASNSVQVTTKNLDNLSDIIDRSTAAGANE 156 Query: 131 XXXTQFAIENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLGQVITVTQN-----DDGNN 185 F++ + + Q+ E M +SLG IT Q + G+ Sbjct: 157 IGSISFSVSDDK--QKQLREDLMNEAVSDASSKATTLAKSLGTKITGVQTSSVSENSGSR 214 Query: 186 PVVYMENAAMAKSVADAAGGTYVEPGEVRVSTQLSVMYELK 226 + + A AK AG T ++PGE VS + V Y +K Sbjct: 215 AIYEYDMATTAKGA--GAGSTPIQPGESTVSMSVQVTYYIK 253 >ref|NP_633595.1| conserved protein [Methanosarcina mazei Goe1] gb|AAM31267.1| conserved protein [Methanosarcina mazei Goe1] Length = 249 Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 8/214 (3%) Query: 16 RNVVSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXXXTLLKTTWGIADKD 75 N +S+ G E + PD + IGV AA+A+EA + LK G+ D++ Sbjct: 41 ENTISMSGYAEQKVVPDTATMRIGVVIQAATAKEASDENAAIMSNIVSELKA-IGLQDRE 99 Query: 76 IQSTQFIVQPNYTYSEKEGQQIKGYIAQHSLKVTYRDLNKVGQLLDXXXXXXXXXXXXTQ 135 IQ++ V P Y+Y Q+I GY A +S+++T +L+ + Q++D Sbjct: 100 IQTSYVSVYPIYSYDTT--QKITGYAASNSVQITTTNLDNLSQIIDRSTAAGANEIGSIS 157 Query: 136 FAIENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLGQVIT---VTQNDDGNNPVVYMEN 192 F++ + ++ Q+ E M +SLG IT + + N P VY E Sbjct: 158 FSVSDD--MQKQLREDLMNEAINDASSKADTLAKSLGVEITGVKTSSISESNGPRVYYEY 215 Query: 193 AAMAKSVADAAGGTYVEPGEVRVSTQLSVMYELK 226 + A A T +EPGE VS + V Y +K Sbjct: 216 DMAVEEKASGAVSTPIEPGESTVSMSVQVTYYIK 249 >ref|NP_637959.1| outer membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM41883.1| outer membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 245 Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 10/212 (4%) Query: 18 VVSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXXXTLLKTTWGIADKDIQ 77 +++V + E PD+ +S GV A A T +K GIADKD+Q Sbjct: 38 LLNVSAEAEAKRVPDIATVSAGVVTQAVDGNAAMRQNAEQMSKVMTAVKAA-GIADKDVQ 96 Query: 78 STQFIVQPNYTYSEKEGQQIKGYIAQHSLKVTYRDLNKVGQLLDXXXXXXXXXXXXTQFA 137 ++ + P Y+Y E E +I GY A +++ + RD+ K+G++LD F+ Sbjct: 97 TSGINLNPQYSYKENEAPKIIGYQASNTVSLKVRDIAKLGKVLDALVAQGANDINGPSFS 156 Query: 138 IENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLG----QVITVTQNDDGNNPVVYMENA 193 I+ P V ++A +SLG +++++++ +G V M A Sbjct: 157 IDQPE----PVYDEARVAALKKARARAETYAKSLGLKVRRIVSISEGRNGGGVVPPMMMA 212 Query: 194 AMAKSVADAAGGTYVEPGEVRVSTQLSVMYEL 225 A +S A A T V PGE +S L V +EL Sbjct: 213 ASMRS-AKAEMDTQVAPGESTLSITLDVTFEL 243 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.310 0.127 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 238,620,479 Number of extensions: 6860582 Number of successful extensions: 11365 Number of sequences better than 1.0e-05: 52 Number of HSP's gapped: 11333 Number of HSP's successfully gapped: 52 Length of query: 226 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 105 Effective length of database: 428,710,599 Effective search space: 45014612895 Effective search space used: 45014612895 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 124 (52.4 bits)