BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0010.p (198 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit ... 323 1e-87 ref|NP_562309.1| ATP-dependent Clp protease proteolytic subunit ... 318 3e-86 ref|ZP_00061404.1| COG0740: Protease subunit of ATP-dependent Cl... 317 7e-86 ref|NP_391334.1| ATP-dependent Clp protease proteolytic subunit ... 315 3e-85 ref|NP_981547.1| ATP-dependent Clp protease, proteolytic subunit... 311 5e-84 >ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans] sp|Q9K709|CLP1_BACHD ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp 1) pir||D84095 endopeptidase Clp (EC 3.4.21.92) chain P [similarity] - Bacillus halodurans (strain C-125) dbj|BAB07283.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans] Length = 194 Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 152/193 (78%), Positives = 174/193 (90%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++ IP V+EQ+NRGERAYDIYSRLLKDRII LGT ++D VANSI+AQ+LFL AEDPDKDI Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 LY+NSPGGSITAGMAI+DTMQYIKP+VSTIC+GMAASMGAFLL AGAKGKRFALPNSE+ Sbjct: 61 SLYINSPGGSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGG +GQA+DIEI RRIL++R+ LN ILAERTGQPLE+I KDTDRD FM+A A Sbjct: 121 MIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKA 180 Query: 181 AEYGIVDKVIEKT 193 EYG++DKVIE T Sbjct: 181 REYGLIDKVIETT 193 >ref|NP_562309.1| ATP-dependent Clp protease proteolytic subunit [Clostridium perfringens] sp|Q8XKK1|CLPP_CLOPE ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) dbj|BAB81099.1| ATP-dependent Clp protease proteolytic subunit [Clostridium perfringens str. 13] Length = 194 Score = 318 bits (816), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 144/189 (76%), Positives = 173/189 (91%) Query: 4 IPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDIHLY 63 +PMVVEQ+++GER+YDI+SRLLKDRII L EVNDV AN ++AQ+LFL +EDPDKDIHLY Sbjct: 5 VPMVVEQTSKGERSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLY 64 Query: 64 VNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIH 123 +NSPGGSIT+GMAI+DTMQYIKPDVSTIC+GMAASMGAFLL++GAKGKRFALPN+EIMIH Sbjct: 65 INSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIH 124 Query: 124 QPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDAAEY 183 QPLGG QGQATDI+I A+RILK++DKLN IL+E T QPLE+I+ D +RDYFM A +A EY Sbjct: 125 QPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEY 184 Query: 184 GIVDKVIEK 192 G++DKVIE+ Sbjct: 185 GLIDKVIER 193 >ref|ZP_00061404.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Clostridium thermocellum ATCC 27405] Length = 194 Score = 317 bits (813), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 145/192 (75%), Positives = 175/192 (91%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 +S +P+VVEQ+NRGER+YDIYSRLLKDRII L E+NDV A+ ++AQMLFL AEDPDKDI Sbjct: 1 MSLVPIVVEQTNRGERSYDIYSRLLKDRIIVLSDEINDVTASLVVAQMLFLEAEDPDKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 LY+NSPGGS+TAG AI+DTMQY+KPDVSTIC+GMAASMGAFLL AGAKGKRFALPNSEI Sbjct: 61 QLYINSPGGSVTAGFAIYDTMQYVKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGGA+GQATDI+I A +I+K+++KLN IL+ERTGQP E+IE+DT+RD+FMSA +A Sbjct: 121 MIHQPLGGARGQATDIKIHAEQIIKIKNKLNRILSERTGQPFEKIERDTERDFFMSAEEA 180 Query: 181 AEYGIVDKVIEK 192 YGIVD+V+E+ Sbjct: 181 KAYGIVDEVMER 192 >ref|NP_391334.1| ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein) [Bacillus subtilis] sp|P80244|CLPP_BACSU ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Stress protein G7) pir||B69601 endopeptidase Clp (EC 3.4.21.92) chain P [similarity] - Bacillus subtilis emb|CAB08043.1| hypothetical protein [Bacillus subtilis] emb|CAB15459.1| ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein) [Bacillus subtilis subsp. subtilis str. 168] gb|AAC46381.1| ClpP [Bacillus subtilis] Length = 197 Score = 315 bits (808), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 147/193 (76%), Positives = 174/193 (90%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++ IP V+EQ+NRGERAYDIYSRLLKDRII LG+ ++D VANSI++Q+LFLAAEDP+K+I Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 LY+NSPGGSITAGMAI+DTMQ+IKP VSTIC+GMAASMGAFLL AG KGKR+ALPNSE+ Sbjct: 61 SLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGGAQGQAT+IEI A+RIL LRDKLN +LAERTGQPLE IE+DTDRD F SA +A Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180 Query: 181 AEYGIVDKVIEKT 193 EYG++DK++ T Sbjct: 181 LEYGLIDKILTHT 193 >ref|NP_981547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus cereus ATCC 10987] gb|AAS44155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus cereus ATCC 10987] Length = 193 Score = 311 bits (797), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 143/189 (75%), Positives = 172/189 (91%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++ IP V+EQ+NRGERAYDIYSRLLKDRII LG+ ++D VANSI++Q+LFL ++DPDKDI Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPDKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 HLY+NSPGGSITAGMAI+DTMQ+IKP VSTIC+GMAASMGAFLL AG KGKR+ALPNSE+ Sbjct: 61 HLYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGGAQGQAT+IEI A+RIL LR+KLN ILA+RTGQPLE +++DTDRD FM+A A Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKA 180 Query: 181 AEYGIVDKV 189 EYG++DK+ Sbjct: 181 LEYGLIDKI 189 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 279,744,872 Number of extensions: 10961580 Number of successful extensions: 27602 Number of sequences better than 1.0e-05: 994 Number of HSP's gapped: 27383 Number of HSP's successfully gapped: 994 Length of query: 198 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 79 Effective length of database: 434,140,797 Effective search space: 34297122963 Effective search space used: 34297122963 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)