BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0009.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_653588.1| hypothetical protein predicted by GeneMark [Bac... 292 9e-78 sp|P35168|CGGR_BACME CENTRAL GLYCOLYTIC GENES REGULATOR >gi|4214... 286 6e-76 ref|NP_244428.1| transcriptional regulator [Bacillus halodurans]... 281 2e-74 ref|NP_834806.1| Central glycolytic genes regulator [Bacillus ce... 277 3e-73 ref|NP_623353.1| Transcriptional regulator, contains sigma facto... 276 7e-73 >ref|NP_653588.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847543.1| gapA transcriptional regulator CggR [Bacillus anthracis str. Ames] ref|NP_981536.1| gapA transcriptional regulator CggR [Bacillus cereus ATCC 10987] gb|AAP29029.1| gapA transcriptional regulator CggR [Bacillus anthracis str. Ames] gb|AAS44144.1| gapA transcriptional regulator CggR [Bacillus cereus ATCC 10987] Length = 342 Score = 292 bits (747), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 153/342 (44%), Positives = 221/342 (64%), Gaps = 2/342 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 MR+ ++ K+LLPDL+ ++ R IL I L IGRR L+ASL MTERVLR+E +LK Sbjct: 1 MRSWIQNTKKLLPDLLPVMQTRMQILQYIRLMQPIGRRNLSASLGMTERVLRSEVQVLKE 60 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 Q L+ + S GM +++ G L+ LE K + GL LE++++ T L++V VVPGD + S Sbjct: 61 QNLVHVASSGMTLTEEGTALVLALEDFMKEISGLKVLEKQLKETLDLDEVFVVPGDSDES 120 Query: 121 PFTKRELGRAGAKALLGVLRSEDTVAVTGGSTLAEMADQLTLPIPLSYKNAWVVPARGGL 180 P+ K E+GRA + L + + VAV GG+TLA +AD + L + VPARGG+ Sbjct: 121 PWVKLEMGRACVTCIKDRLTANNIVAVAGGTTLAAVADMMQLDC--KDLHMLFVPARGGI 178 Query: 181 GESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXXV 240 GE +E++ANTI + MA+ +NYRLL+VPD +S +AY S+ + ++ E+++ + Sbjct: 179 GEGVELEANTICAKMAQNTMSNYRLLYVPDHVSSEAYASIVTEPSVKEVLELIRSSNIVI 238 Query: 241 HGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIRT 300 HGIGDA+ M RRR EA +IQ AV E+FGYYFNE+G VVH + T+G++LED+ Sbjct: 239 HGIGDALTMARRRNTSEADWLKIQASEAVGEAFGYYFNEQGNVVHKVRTVGMQLEDLQNV 298 Query: 301 EVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAAVEIGKEI 342 V+ +AGG KAKAI A+++ G IL+TDE AA ++ K I Sbjct: 299 SHVVAVAGGSSKAKAIQAVIKQGHTSILITDEGAAKQLTKGI 340 >sp|P35168|CGGR_BACME CENTRAL GLYCOLYTIC GENES REGULATOR pir||JQ1952 hypothetical 37.7K protein - Bacillus megaterium gb|AAA73201.1| [gap] gene products Length = 342 Score = 286 bits (731), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 154/344 (44%), Positives = 233/344 (67%), Gaps = 3/344 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 MR+L+E+Q++LLP+L+ +++RY IL I L IGRR LA SL +TERVLR+E LK Sbjct: 1 MRSLIEVQRKLLPELLSVMQKRYQILQYIRLMQPIGRRNLAVSLGLTERVLRSEVTFLKE 60 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 Q LI+I GM +++ G LL LE + K + GL LE ++ + L++V+VV GD + S Sbjct: 61 QDLIDIYPSGMTLTNEGELLLAELEEVMKEVSGLRLLETTLKEAFSLSEVVVVSGDSDQS 120 Query: 121 PFTKRELGRAGAKALLG-VLRSEDTVAVTGGSTLAEMADQLTLPIPLSYKNAWVVPARGG 179 P+ K E+GRA + ++ ++TVAVTGG+TLA +A+ +T P L + + VPARGG Sbjct: 121 PWVKNEMGRASVSCIKERLVGKKNTVAVTGGTTLAAVAEMMT-P-DLKHPDVLFVPARGG 178 Query: 180 LGESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXX 239 LGE+++ QANTI + MA++ ++YRLLHVPD LS++AY+S+ + +I +++ Sbjct: 179 LGENVQNQANTICAKMAEKSMSHYRLLHVPDQLSDEAYRSIIGEPSIKDMLHLIKSAGMV 238 Query: 240 VHGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIR 299 VHGIGDAM M RRK +A + +++ AV E+FGYYFN +G+VVH + T+G++L+D+ Sbjct: 239 VHGIGDAMTMAERRKTPQADLEKVKNGHAVGEAFGYYFNHQGEVVHKVKTVGIQLDDLKN 298 Query: 300 TEVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAAVEIGKEID 343 + VI +AGG KAKAI A ++ + IL+TDE AA E+ ++ + Sbjct: 299 NKCVIAVAGGSSKAKAIKAFMQQAHDSILITDEGAAKELVRDFN 342 >ref|NP_244428.1| transcriptional regulator [Bacillus halodurans] pir||A84095 transcription regulator BH3561 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07280.1| transcriptional regulator [Bacillus halodurans] Length = 339 Score = 281 bits (718), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/335 (44%), Positives = 218/335 (65%), Gaps = 2/335 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 M L++IQ++L PD+++ + +RY IL I L IGRR+L++SL ++ERVLR E LK Sbjct: 1 MDQLIDIQRKLAPDVLDIMIKRYRILQYIRLMQPIGRRSLSSSLAISERVLRGEVTFLKD 60 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 QGL+ GM V+ G +L + LE + K L GL DLE K+R+ G+ + IVVPGD + Sbjct: 61 QGLLMFAPTGMYVTAEGEKLYEQLEGVMKELLGLRDLEAKLRSRLGVKEAIVVPGDSDAF 120 Query: 121 PFTKRELGRAGAKALLGVLRSEDTVAVTGGSTLAEMADQLTLPIPLSYKNAWVVPARGGL 180 + KRELGRA + ++ D +AV GG+TLA +A+ +T P P + + VPARGGL Sbjct: 121 TWVKRELGRACIARMKEAVKPHDVIAVMGGTTLAAVAEMMT-PDP-NMETVTFVPARGGL 178 Query: 181 GESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXXV 240 GE +E QANTI++ MA + GANY+LLHVPD LSE+ Y SL + + +I++ + Sbjct: 179 GEQVENQANTISAQMAGKAGANYKLLHVPDQLSEETYASLIAEPGVRDILEKIKSASMVI 238 Query: 241 HGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIRT 300 HGIG+A M RR E + ++ EE VAE+FGYYF+++G V + T+GL+L+ + + Sbjct: 239 HGIGEANTMALRRGSSEEFLHKLTEEQVVAEAFGYYFDKKGTVRYKQRTIGLQLDTLDDS 298 Query: 301 EVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAA 335 ++VI +AGG KA+AI A + + D+L+TDE AA Sbjct: 299 KLVISVAGGASKAEAISAYMNYRPSDVLITDEEAA 333 >ref|NP_834806.1| Central glycolytic genes regulator [Bacillus cereus ATCC 14579] gb|AAP12007.1| Central glycolytic genes regulator [Bacillus cereus ATCC 14579] Length = 347 Score = 277 bits (708), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/340 (45%), Positives = 219/340 (64%), Gaps = 2/340 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 MR+ ++ K+LLPDL+ ++ R IL I L IGRR L+ASL MTERVLR+E +LK Sbjct: 6 MRSWIQNTKKLLPDLLPVMQTRMQILQYIRLMQPIGRRNLSASLGMTERVLRSEVQVLKE 65 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 Q L+ + S GM +++ G L+ LE K + GL LE++++ T L++V VVPGD + S Sbjct: 66 QNLVHVASSGMTLTEEGTALVLALEDFMKEISGLKVLEKQLKETLDLDEVFVVPGDSDES 125 Query: 121 PFTKRELGRAGAKALLGVLRSEDTVAVTGGSTLAEMADQLTLPIPLSYKNAWVVPARGGL 180 P+ K E+GRA + L + + VAV GG+TLA AD + L + VPARGG+ Sbjct: 126 PWVKLEMGRACVTCIKDRLTANNIVAVAGGTTLAAAADMMQLDCKDLH--MLFVPARGGI 183 Query: 181 GESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXXV 240 GE +E++ANTI + MA+ +NYRLL+VPD +S +AY S+ + ++ E+++ + Sbjct: 184 GEGVELEANTICAKMAQNTMSNYRLLYVPDHVSSEAYASIVTEPSVKEVLELIRSSNIVI 243 Query: 241 HGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIRT 300 HGIGDA+ M RRR EA +IQ AV E+FGYYFNEEG VVH + T+G++LED+ Sbjct: 244 HGIGDALTMARRRSTSEADWLKIQASEAVGEAFGYYFNEEGNVVHKVRTVGMQLEDLQNV 303 Query: 301 EVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAAVEIGK 340 V+ +AGG KAKAI A+++ G IL+TDE AA ++ K Sbjct: 304 SHVVAVAGGSSKAKAIQAVIKQGHTSILITDEGAAKQLTK 343 >ref|NP_623353.1| Transcriptional regulator, contains sigma factor-related N-terminal domain [Thermoanaerobacter tengcongensis] gb|AAM24957.1| Transcriptional regulator, contains sigma factor-related N-terminal domain [Thermoanaerobacter tengcongensis] Length = 340 Score = 276 bits (705), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 143/338 (42%), Positives = 223/338 (65%), Gaps = 2/338 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 M++++ +Q++++P+L+E L++RY I+ I + IGRR L+ L++ ER++R E LKS Sbjct: 1 MKDIIALQQKIVPELIELLQKRYAIMRNIYFNQPIGRRALSHQLNIGERIIRTEVSFLKS 60 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 QGLI+I +GM V+ G L++ L+ L GLD++E+ + + KVIVVPG+ E Sbjct: 61 QGLIDINPMGMTVTKEGEELIESLKDFIHELKGLDNIEKVLEEKLKVEKVIVVPGNTEED 120 Query: 121 PFTKRELGRAGAKALLGVLRSEDTVAVTGGSTLAEMADQLTLPIPLSYKNAWVVPARGGL 180 P TK+ELG++ A L ++R + +A+TGGST+ E+A+ +P + VVPARGGL Sbjct: 121 PMTKKELGKSAANYLREIIRYDSVIALTGGSTVLEVAN--GMPQLYAQSEIVVVPARGGL 178 Query: 181 GESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXXV 240 G +E QANTIAS +AK++G Y++L+VPD LS++A +SL + +I E+V + Sbjct: 179 GREVEKQANTIASILAKKLGGTYKMLYVPDHLSKEAVESLMKEPDIKEVVDILKKADILI 238 Query: 241 HGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIRT 300 GIG A M RR L ++ ++E+GAVAES GYYF++EG++V+ ++ L ++D+ Sbjct: 239 FGIGRADVMADRRNLPQSIKDFLKEKGAVAESLGYYFDKEGKIVYATPSIFLTIDDLKSV 298 Query: 301 EVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAAVEI 338 + +IG++GGK KA+AI A R G +LVTDE AA EI Sbjct: 299 KHLIGVSGGKSKAEAILATCRSGNVKVLVTDEGAAFEI 336 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 455,441,424 Number of extensions: 17495264 Number of successful extensions: 50456 Number of sequences better than 1.0e-05: 86 Number of HSP's gapped: 50388 Number of HSP's successfully gapped: 86 Length of query: 350 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 224 Effective length of database: 415,135,104 Effective search space: 92990263296 Effective search space used: 92990263296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)