BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0002.p
         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_391243.1| yvaL [Bacillus subtilis] >gi|6226126|sp|O32233|...    53   2e-06

>ref|NP_391243.1| yvaL [Bacillus subtilis]
 sp|O32233|SECG_BACSU Probable protein-export membrane protein secG
 pir||A70028 hypothetical protein yvaL - Bacillus subtilis
 emb|CAB15368.1| preprotein translocase subunit [Bacillus subtilis subsp. subtilis
          str. 168]
          Length = 76

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 43/73 (58%)

Query: 1  MDIFLKVLLLIFSVGLIAVVLLQKXXXXXXXXXXXXXXEHLFGKTKARGMELVLQRVTVG 60
          M   L  LL+I S+ LI VVLLQ               E LFGK KARG++L+L R+TV 
Sbjct: 1  MHAVLITLLVIVSIALIIVVLLQSSKSAGLSGAISGGAEQLFGKQKARGLDLILHRITVV 60

Query: 61 LAAGFFIMSILVA 73
          LA  FF+++I +A
Sbjct: 61 LAVLFFVLTIALA 73


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.337    0.151    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 64,278,765
Number of extensions: 1275319
Number of successful extensions: 5282
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5285
Number of HSP's successfully gapped: 8
Length of query: 77
Length of database: 757,237,578
Length adjustment: 47
Effective length of query: 30
Effective length of database: 629,627,925
Effective search space: 18888837750
Effective search space used: 18888837750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 120 (50.8 bits)