BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0004.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA66051.1| hypothetical protein [Bacillus subtilis] 247 2e-64 ref|NP_244696.1| BH3829~unknown conserved protein [Bacillus halo... 208 7e-53 ref|NP_389277.1| similar to hypothetical proteins from B. subtil... 167 1e-40 ref|NP_388806.1| similar to hypothetical proteins [Bacillus subt... 155 7e-37 ref|NP_241955.1| BH1089~unknown conserved protein [Bacillus halo... 150 2e-35 >emb|CAA66051.1| hypothetical protein [Bacillus subtilis] Length = 226 Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 110/218 (50%), Positives = 155/218 (71%), Gaps = 2/218 (0%) Query: 4 KSFYAFDGKIPVPAVIRSYTEADFTELITIQSEAFPPPYPAELWWNREQLLNHVTLFPEG 63 K Y DG+ IR+YTE D LI++Q E FPPP+P EL W+ +QL +H+ FPEG Sbjct: 5 KQMYVHDGRKFEALTIRNYTETDIERLISLQEECFPPPFPQELLWSEDQLASHIKTFPEG 64 Query: 64 ALCVEVNGELAGSVTGLKIRFDPKAPALQHTWSEVTADGYITTHQPDGNTLYIADLCVRP 123 ALC +NG + GS+T L ++F+P +P HTW++ T +G I H+P GNTLY+ D+ V P Sbjct: 65 ALCALINGRIIGSMTALIVQFEPDSP--DHTWAQATDNGSIKNHEPHGNTLYVVDISVSP 122 Query: 124 KYRKLGLGKELVQSLYHAVVEQKLERLVGAGRMPGYHLQASRMSAEEYLAGVVAGKWSDP 183 YRKLG+GK L+ ++Y V+++LERL+G GR+P Y+ A +SA +Y+ V+ G+ +DP Sbjct: 123 HYRKLGIGKWLMNTMYELTVDKRLERLLGGGRIPLYYKYAHEISAVQYVEDVMEGRKNDP 182 Query: 184 VITFLLRCGRSPVGVVADYLEDEESGNYAALMEWRNPF 221 V++FLLRCGRSP+ VV++YLED+ES NY LMEW+N F Sbjct: 183 VLSFLLRCGRSPIRVVSNYLEDKESLNYGVLMEWKNVF 220 >ref|NP_244696.1| BH3829~unknown conserved protein [Bacillus halodurans] pir||E84128 hypothetical protein BH3829 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07548.1| BH3829~unknown conserved protein [Bacillus halodurans] Length = 206 Score = 208 bits (529), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 138/206 (66%), Gaps = 5/206 (2%) Query: 18 VIRSYTEADFTELITIQSEAFPPPYPAELWWNREQLLNHVTLFPEGALCVEVNGELAGSV 77 ++R YT ADF L+ +Q EAFPPP+P ELWWNR Q+ HV FPEGA+ + ++ GS Sbjct: 5 IVRPYTLADFDGLLEVQKEAFPPPFPEELWWNRAQIAAHVESFPEGAMVAVIRDKIVGSA 64 Query: 78 TGLKIRFDPKAPALQHTWSEVTADGYI-TTHQPDGNTLYIADLCVRPKYRKLGLGKELVQ 136 T L I++D K HTW EV +GYI ++HQPDG++LY DLCVRP +R G+ + L + Sbjct: 65 TSLLIKYDGKP----HTWEEVADNGYIQSSHQPDGDSLYGIDLCVRPSFRGKGVARALYE 120 Query: 137 SLYHAVVEQKLERLVGAGRMPGYHLQASRMSAEEYLAGVVAGKWSDPVITFLLRCGRSPV 196 + V E L R V R+PGYH AS+M+ E+Y+ VV GK D V+TF+L+ G P+ Sbjct: 121 ARKQLVRELGLTRFVAGCRIPGYHQVASQMTVEDYVQAVVDGKRHDLVLTFMLKQGLRPL 180 Query: 197 GVVADYLEDEESGNYAALMEWRNPFL 222 ++ +YLED+ES +YA L+EW+NP L Sbjct: 181 QILPNYLEDDESLHYAVLVEWKNPDL 206 >ref|NP_389277.1| similar to hypothetical proteins from B. subtilis [Bacillus subtilis] pir||A69870 conserved hypothetical protein ykwB - Bacillus subtilis emb|CAB13267.1| ykwB [Bacillus subtilis subsp. subtilis str. 168] Length = 173 Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 73/151 (48%), Positives = 103/151 (68%), Gaps = 2/151 (1%) Query: 4 KSFYAFDGKIPVPAVIRSYTEADFTELITIQSEAFPPPYPAELWWNREQLLNHVTLFPEG 63 K Y DG+ IR+YTE D LI++Q E FPPP+P EL W+ +QL +H+ FPEG Sbjct: 5 KQMYVHDGRKFEALTIRNYTETDIERLISLQEECFPPPFPQELLWSEDQLASHIKTFPEG 64 Query: 64 ALCVEVNGELAGSVTGLKIRFDPKAPALQHTWSEVTADGYITTHQPDGNTLYIADLCVRP 123 ALC +NG + GS+T L ++F+P +P HTW++ T +G I H+P GNTLY+ D+ V P Sbjct: 65 ALCALINGRIIGSMTALIVQFEPDSP--DHTWAQATDNGSIKNHEPHGNTLYVVDISVSP 122 Query: 124 KYRKLGLGKELVQSLYHAVVEQKLERLVGAG 154 YRKLG+GK L+ ++Y V+++LERL+G G Sbjct: 123 HYRKLGIGKWLMNTMYELTVDKRLERLLGGG 153 >ref|NP_388806.1| similar to hypothetical proteins [Bacillus subtilis] sp|P54608|YHCX_BACSU Hypothetical protein yhcX pir||D69824 conserved hypothetical protein yhcX - Bacillus subtilis emb|CAA65708.1| hypothetical protein [Bacillus subtilis] emb|CAB12753.1| yhcX [Bacillus subtilis subsp. subtilis str. 168] Length = 513 Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 114/203 (56%), Gaps = 7/203 (3%) Query: 18 VIRSYTEADFTELITIQSEAFPPPYPAELWWNREQLLNHVTLFPEGALCVEVNGELAGSV 77 VIR+ E D ++I +Q + FP P W RE L++H+ FPEG C E GE+ GS Sbjct: 15 VIRNIEEKDIDKIIDLQKDCFPGMEP----WKREHLISHLEHFPEGQFCAEFEGEIIGSC 70 Query: 78 TGLKIRFDPKAPALQHTWSEVTADGYITTHQPDGNTLYIADLCVRPKYRKLGLGKELVQS 137 + L I FD +HTW ++T DGYIT H PDG +Y ++ V PKYR++ +G L ++ Sbjct: 71 SSLLINFDEYDD--RHTWQDITDDGYITNHNPDGLNMYGIEVMVHPKYRRMKIGHRLYEA 128 Query: 138 LYHAVVEQKLERLVGAGRMPGYHLQASRMSAEEYLAGVVAGKWSDPVITFLLRCGRSPVG 197 L+ ++ GR+P YH A M+A EY+ V + DPV++F L G + + Sbjct: 129 RKDLARRLSLKSIIIGGRIPNYHKYAEEMTAREYVEQVTRHQIYDPVLSFQLMNGFTLMR 188 Query: 198 VVADYL-EDEESGNYAALMEWRN 219 + +YL +D S YA LMEW N Sbjct: 189 INPNYLPDDTASIKYATLMEWNN 211 >ref|NP_241955.1| BH1089~unknown conserved protein [Bacillus halodurans] pir||A83786 hypothetical protein BH1089 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04808.1| BH1089~unknown conserved protein [Bacillus halodurans] Length = 512 Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 118/210 (56%), Gaps = 7/210 (3%) Query: 11 GKIPVPAVIRSYTEADFTELITIQSEAFPPPYPAELWWNREQLLNHVTLFPEGALCVEVN 70 K ++R+ E DF +I +Q FP P W RE L +H+ +FPEG CVE + Sbjct: 7 SKFEKKMILRNIHEDDFDAIIAMQQICFPNMEP----WKREHLESHLKIFPEGQFCVEYD 62 Query: 71 GELAGSVTGLKIRFDPKAPALQHTWSEVTADGYITTHQPDGNTLYIADLCVRPKYRKLGL 130 G++ GS L I FD QHTW E+T +G+IT H P+G LY ++ V P+YR++ + Sbjct: 63 GKVIGSCASLIINFDEYDD--QHTWDEITDNGFITNHDPEGYNLYGIEVMVHPEYRRMKI 120 Query: 131 GKELVQSLYHAVVEQKLERLVGAGRMPGYHLQASRMSAEEYLAGVVAGKWSDPVITFLLR 190 G+ L ++ + L+ ++ GR+P Y+ A +M+ +Y+ V+ DPV+TF + Sbjct: 121 GRRLYEARKDLARQLNLKSIIIGGRIPNYYKHADQMTPRQYVEEVMMHNIYDPVLTFQVM 180 Query: 191 CGRSPVGVVADYLEDEE-SGNYAALMEWRN 219 G + V +YL+D++ S YA LMEW N Sbjct: 181 NGFTLKRVNNNYLQDDKASMKYATLMEWNN 210 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 370,365,646 Number of extensions: 15350795 Number of successful extensions: 42826 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 42795 Number of HSP's successfully gapped: 22 Length of query: 222 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 101 Effective length of database: 428,710,599 Effective search space: 43299770499 Effective search space used: 43299770499 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)