BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0001.p (547 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244675.1| arginyl-tRNA synthetase [Bacillus halodurans] >... 679 0.0 ref|NP_391614.1| arginyl-tRNA synthetase [Bacillus subtilis] >gi... 674 0.0 ref|NP_835025.1| Arginyl-tRNA synthetase [Bacillus cereus ATCC 1... 663 0.0 ref|NP_653828.1| tRNA-synt_1d, tRNA synthetases class I (R) [Bac... 661 0.0 ref|NP_981785.1| arginyl-tRNA synthetase [Bacillus cereus ATCC 1... 660 0.0 >ref|NP_244675.1| arginyl-tRNA synthetase [Bacillus halodurans] sp|Q9K6C1|SYR1_BACHD Arginyl-tRNA synthetase 1 (Arginine--tRNA ligase 1) (ArgRS 1) pir||H84125 arginyl-tRNA synthetase argS [imported] - Bacillus halodurans (strain C-125) dbj|BAB07527.1| arginyl-tRNA synthetase [Bacillus halodurans] Length = 556 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/548 (59%), Positives = 399/548 (72%), Gaps = 3/548 (0%) Query: 1 LREXXXXXXXXXXXXTREELPAIVLEVPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAII 60 LRE T E +P ++LE PK+KAHGD ATN AMQL ++AK+ PR IAE + Sbjct: 11 LREEIVVAVKAAGLATDETIPEVILETPKEKAHGDFATNMAMQLARVAKKAPRLIAEELT 70 Query: 61 GHLDKNAASIEKAEIAGPGFINFTLSKSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFV 120 LD+ A+IEK EIAGPGFINF L SYL +I V YG + G+G++V++EFV Sbjct: 71 AKLDRKRAAIEKIEIAGPGFINFFLDNSYLREMIPTVLRAESAYGETNVGKGKKVQVEFV 130 Query: 121 SANPTGSLHLGHARGAAVGDALCNVLDFAGYEVTREYYINDAGNQVANLCKSIEARYLQE 180 SANPTG+LHLGHARGAAVGDALCN+L AGY+V+REYYINDAGNQ+ NL S+EARY Q Sbjct: 131 SANPTGNLHLGHARGAAVGDALCNILAKAGYDVSREYYINDAGNQINNLALSLEARYFQA 190 Query: 181 LGQPAEMPEDGYHGEDIKGFAKELVAEKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDL 240 LG +MPEDGYHGEDI F K+L GD + + +R AFFR YGL +EL+KIK DL Sbjct: 191 LGMEKDMPEDGYHGEDIIQFGKDLAETHGDKFVHESSEERLAFFREYGLKRELEKIKSDL 250 Query: 241 TRFRVGFDIWFSETSLYENGEVLRSLDELRERGEVYEQDGATWLQTTKYGDDKDRVLIKN 300 FRV FD W+SETSLY G+V ++L+ L+E+G+ YEQDGA W ++T+YGDDKDRVL+KN Sbjct: 251 EEFRVPFDNWYSETSLYTTGKVEKTLNVLKEKGKTYEQDGALWFRSTEYGDDKDRVLVKN 310 Query: 301 DGTYTYLTPDIAYHNDKYGRGYDTMINIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQ 360 DG+YTYLTPDI+YH DK+ RG++ +INIWGADHHGYIPRMKAA+ ALG + ++L V I Q Sbjct: 311 DGSYTYLTPDISYHEDKFLRGFEKLINIWGADHHGYIPRMKAAIQALGYEKDQLDVQIIQ 370 Query: 361 MVSLFQNGEKVKMSKRTGKAVTMEDLMDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSN 420 MVSLFQNGEKVKMSKRTGKAVT+ DLM+EVGIDA RYFF MRS DSHLDFDMDLA+S SN Sbjct: 371 MVSLFQNGEKVKMSKRTGKAVTLRDLMEEVGIDATRYFFAMRSADSHLDFDMDLAVSKSN 430 Query: 421 ENPVFYVQYAHARICSIFRQAEEQGIVLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGI 480 ENPV+YVQYAHAR+CS+ R+ +E G+ + D + + +E EY LL+KIGE P + Sbjct: 431 ENPVYYVQYAHARVCSMLRKGKELGLSFDE--STDLSPIASEKEYDLLKKIGEFPEVVAE 488 Query: 481 AASSYAPHRLIRYVYDLASLFHSYYKAERVIT-EDXXXXXXXXXXXXXXXXXXXNVLRLV 539 AA PHR+ YV++LAS HS+Y AE+VI E+ N L LV Sbjct: 489 AAQKQMPHRITNYVHELASTLHSFYNAEQVINPENDEQSKARLALMKATQVTLKNALSLV 548 Query: 540 GVTAPDRM 547 GV AP+RM Sbjct: 549 GVEAPERM 556 >ref|NP_391614.1| arginyl-tRNA synthetase [Bacillus subtilis] sp|P46906|SYR_BACSU Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) pir||E69589 arginine-tRNA ligase (EC 6.1.1.19) argS - Bacillus subtilis emb|CAB09703.1| arginyl tRNA synthetase [Bacillus subtilis] emb|CAB15761.1| arginyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] Length = 556 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/530 (59%), Positives = 395/530 (74%), Gaps = 3/530 (0%) Query: 19 ELPAIVLEVPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAIIGHLDKNAASIEKAEIAGP 78 ++P +VLE PKDK HGD +TN AMQL ++AK+ PRQIAE I+ H DK ASIEK +IAGP Sbjct: 29 QIPNVVLETPKDKTHGDYSTNMAMQLARVAKKAPRQIAEEIVAHFDKGKASIEKLDIAGP 88 Query: 79 GFINFTLSKSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFVSANPTGSLHLGHARGAAV 138 GFINF ++ YL +I V E G+ YG + G G+RV++EFVSANPTG LHLGHARGAAV Sbjct: 89 GFINFYMNNQYLTKLIPSVLEAGEAYGETNIGNGERVQVEFVSANPTGDLHLGHARGAAV 148 Query: 139 GDALCNVLDFAGYEVTREYYINDAGNQVANLCKSIEARYLQELGQPAEMPEDGYHGEDIK 198 GD+LCNVL AGY+V+REYYINDAGNQ+ NL S+E RY + LG MPEDGY GEDI Sbjct: 149 GDSLCNVLSKAGYDVSREYYINDAGNQINNLALSVEVRYFEALGLEKPMPEDGYRGEDII 208 Query: 199 GFAKELVAEKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDLTRFRVGFDIWFSETSLYE 258 K L E GD ++ +R AFFR YGL EL+K+++DL FRV FD+W+SETSLY+ Sbjct: 209 AIGKRLAEEYGDRFVNEEESERLAFFREYGLKYELEKLRKDLENFRVPFDVWYSETSLYQ 268 Query: 259 NGEVLRSLDELRERGEVYEQDGATWLQTTKYGDDKDRVLIKNDGTYTYLTPDIAYHNDKY 318 NG++ ++L+ LRE+G VYE+DGATW ++T +GDDKDRVLIK DGTYTYL PDIAYH DK Sbjct: 269 NGKIDKALEALREKGHVYEEDGATWFRSTTFGDDKDRVLIKKDGTYTYLLPDIAYHKDKL 328 Query: 319 GRGYDTMINIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQMVSLFQNGEKVKMSKRTG 378 RG+D +IN+WGADHHGYIPRMKAA+ ALG + L V I Q+V L++NGEK+KMSKRTG Sbjct: 329 DRGFDKLINVWGADHHGYIPRMKAAIEALGYEKGTLEVEIIQLVHLYKNGEKMKMSKRTG 388 Query: 379 KAVTMEDLMDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARICSIF 438 KAVTM DL++EVG+DA+RYFF MRS D+H+DFD+DLA+STSNENPV+Y QYAHARICS+ Sbjct: 389 KAVTMRDLIEEVGLDAVRYFFAMRSADTHMDFDLDLAVSTSNENPVYYAQYAHARICSML 448 Query: 439 RQAEEQGIVLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGIAASSYAPHRLIRYVYDLA 498 RQ EEQG L A++D++ + +E EY LL+ IG P + AA PHR+ Y+YDLA Sbjct: 449 RQGEEQG--LKPAADLDFSHIQSEKEYDLLKTIGGFPEAVAEAAEKRIPHRVTNYIYDLA 506 Query: 499 SLFHSYYKAERVI-TEDXXXXXXXXXXXXXXXXXXXNVLRLVGVTAPDRM 547 S HS+Y AE+VI E+ N L+L+GV+AP++M Sbjct: 507 SALHSFYNAEKVIDPENEEKSRARLALMKATQITLNNALQLIGVSAPEKM 556 >ref|NP_835025.1| Arginyl-tRNA synthetase [Bacillus cereus ATCC 14579] sp|Q814Q8|SYR_BACCR Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) gb|AAP12226.1| Arginyl-tRNA synthetase [Bacillus cereus ATCC 14579] Length = 556 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/533 (58%), Positives = 392/533 (73%), Gaps = 3/533 (0%) Query: 16 TREELPAIVLEVPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAIIGHLDKNAASIEKAEI 75 T E++P +VLE PKDK +GD +TN AMQL ++AK+ PR IAE ++ + DK ASIEK EI Sbjct: 26 TEEQIPNVVLESPKDKTNGDFSTNMAMQLARVAKKAPRMIAEELVANFDKAKASIEKIEI 85 Query: 76 AGPGFINFTLSKSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFVSANPTGSLHLGHARG 135 AGPGFINF + SYL +I + G+ YG + G+G++V++EFVSANPTG LHLGHARG Sbjct: 86 AGPGFINFYMDNSYLTDLIPTIVNAGEAYGETNTGKGEKVQVEFVSANPTGDLHLGHARG 145 Query: 136 AAVGDALCNVLDFAGYEVTREYYINDAGNQVANLCKSIEARYLQELGQPAEMPEDGYHGE 195 AAVGD LCN+L AGY+V+REYYINDAGNQ+ NL S+EARY+Q LG EMPEDGYHG Sbjct: 146 AAVGDTLCNLLAKAGYDVSREYYINDAGNQIHNLALSVEARYMQALGLEKEMPEDGYHGA 205 Query: 196 DIKGFAKELVAEKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDLTRFRVGFDIWFSETS 255 DI G K L E GD + F+R YGL EL K+++DL FRV FD+WFSETS Sbjct: 206 DIIGIGKRLAEEFGDRYAKADEKESYEFYREYGLKYELAKLQKDLESFRVKFDVWFSETS 265 Query: 256 LYENGEVLRSLDELRERGEVYEQDGATWLQTTKYGDDKDRVLIKNDGTYTYLTPDIAYHN 315 LY+NG++ ++L L+ER E++E+DGATW ++ YGDDK+RVLIKNDG+YTYLTPDIAYH Sbjct: 266 LYKNGKIDQALAVLKERDEIFEEDGATWFRSMTYGDDKNRVLIKNDGSYTYLTPDIAYHR 325 Query: 316 DKYGRGYDTMINIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQMVSLFQNGEKVKMSK 375 DK RG+D +INIWGADHHGYIPRMKAA+ ALG D E L V I QMV L+QNGEK+KMSK Sbjct: 326 DKLERGFDKLINIWGADHHGYIPRMKAAIQALGYDKETLEVEIIQMVQLYQNGEKMKMSK 385 Query: 376 RTGKAVTMEDLMDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARIC 435 RTGKAVT+ +LM+EVG+DA+RYFF MRS DSHLDFDMDLA+S SNENPV+Y QYAHAR+C Sbjct: 386 RTGKAVTLRELMEEVGVDAMRYFFAMRSGDSHLDFDMDLAVSKSNENPVYYAQYAHARVC 445 Query: 436 SIFRQAEEQGIVLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGIAASSYAPHRLIRYVY 495 SI RQ EE G L +++Y +T+E E LL+K+GE PA + AA PHR+ Y + Sbjct: 446 SILRQGEELG--LATGGDVNYKLVTSEKEVELLKKLGEFPAVVADAAQKRLPHRITNYAF 503 Query: 496 DLASLFHSYYKAERVITEDXXXXXXXX-XXXXXXXXXXXNVLRLVGVTAPDRM 547 +LA+ HS+Y AE+V+ +D N L +VGV+AP++M Sbjct: 504 ELAATLHSFYNAEKVLNQDNLELSKARYELMKAVRTTLQNALAIVGVSAPEKM 556 >ref|NP_653828.1| tRNA-synt_1d, tRNA synthetases class I (R) [Bacillus anthracis A2012] ref|NP_847763.1| arginyl-tRNA synthetase [Bacillus anthracis str. Ames] sp|Q81JT7|SYR1_BACAA Arginyl-tRNA synthetase 1 (Arginine--tRNA ligase 1) (ArgRS 1) gb|AAP29249.1| arginyl-tRNA synthetase [Bacillus anthracis str. Ames] Length = 556 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/533 (58%), Positives = 391/533 (73%), Gaps = 3/533 (0%) Query: 16 TREELPAIVLEVPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAIIGHLDKNAASIEKAEI 75 T E++P +VLE PKDK +GD +TN AMQL ++AK+ PR IAE ++ + DK AS EK EI Sbjct: 26 TEEQIPNVVLESPKDKTNGDFSTNMAMQLARVAKKAPRMIAEELVANFDKAKASTEKIEI 85 Query: 76 AGPGFINFTLSKSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFVSANPTGSLHLGHARG 135 AGPGFINF + SYL +I + G+ YG + G+G++V++EFVSANPTG LHLGHARG Sbjct: 86 AGPGFINFYMDNSYLTDLIPTIVNAGEAYGETNTGKGEKVQVEFVSANPTGDLHLGHARG 145 Query: 136 AAVGDALCNVLDFAGYEVTREYYINDAGNQVANLCKSIEARYLQELGQPAEMPEDGYHGE 195 AAVGD LCN+L AGY+V+REYYINDAGNQ+ NL S+EARY+Q LG EMPEDGYHG Sbjct: 146 AAVGDTLCNLLAKAGYDVSREYYINDAGNQIHNLALSVEARYMQALGLEKEMPEDGYHGA 205 Query: 196 DIKGFAKELVAEKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDLTRFRVGFDIWFSETS 255 DI G K L E GD + F+R YGL EL K+++DL FRV FD+WFSETS Sbjct: 206 DIIGIGKRLAEEFGDRYAKADEKESYEFYREYGLKYELAKLQKDLESFRVKFDVWFSETS 265 Query: 256 LYENGEVLRSLDELRERGEVYEQDGATWLQTTKYGDDKDRVLIKNDGTYTYLTPDIAYHN 315 LY+NG++ ++L L+ER E++E+DGATW ++ YGDDK+RVLIKNDG+YTYLTPDIAYH Sbjct: 266 LYKNGKIDQALAVLKERDEIFEEDGATWFRSMTYGDDKNRVLIKNDGSYTYLTPDIAYHR 325 Query: 316 DKYGRGYDTMINIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQMVSLFQNGEKVKMSK 375 DK RG+D +INIWGADHHGYIPRMKAA+ ALG D E L V I QMV L+QNGEK+KMSK Sbjct: 326 DKLERGFDKLINIWGADHHGYIPRMKAAIQALGYDKETLEVEIIQMVQLYQNGEKMKMSK 385 Query: 376 RTGKAVTMEDLMDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARIC 435 RTGKAVT+ +LM+EVG+DA+RYFF MRS DSHLDFDMDLA+S SNENPV+Y QYAHAR+C Sbjct: 386 RTGKAVTLRELMEEVGVDAMRYFFAMRSGDSHLDFDMDLAVSKSNENPVYYAQYAHARVC 445 Query: 436 SIFRQAEEQGIVLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGIAASSYAPHRLIRYVY 495 SI RQ EE G L +++Y +T+E E LL+K+GE PA + AA PHR+ Y + Sbjct: 446 SILRQGEELG--LATGGDVNYKLVTSEKEVELLKKLGEFPAVVADAAQKRLPHRITNYAF 503 Query: 496 DLASLFHSYYKAERVITEDXXXXXXXX-XXXXXXXXXXXNVLRLVGVTAPDRM 547 +LA+ HS+Y AE+V+ +D N L +VGV+AP++M Sbjct: 504 ELAATLHSFYNAEKVLNQDNLELSKARYELMKAVRTTLQNALAIVGVSAPEKM 556 >ref|NP_981785.1| arginyl-tRNA synthetase [Bacillus cereus ATCC 10987] gb|AAS44393.1| arginyl-tRNA synthetase [Bacillus cereus ATCC 10987] Length = 556 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/533 (58%), Positives = 390/533 (73%), Gaps = 3/533 (0%) Query: 16 TREELPAIVLEVPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAIIGHLDKNAASIEKAEI 75 T E++P +VLE PKDK +GD +TN AMQL ++AK+ PR IAE ++ + DK ASIEK EI Sbjct: 26 TEEQIPNVVLESPKDKTNGDFSTNMAMQLARVAKKAPRMIAEELVANFDKAKASIEKIEI 85 Query: 76 AGPGFINFTLSKSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFVSANPTGSLHLGHARG 135 AGPGFINF + SYL +I + G+ YG G+G++V++EFVSANPTG LHLGHARG Sbjct: 86 AGPGFINFYMDNSYLTDLIPTIVNAGEAYGETSTGKGEKVQVEFVSANPTGDLHLGHARG 145 Query: 136 AAVGDALCNVLDFAGYEVTREYYINDAGNQVANLCKSIEARYLQELGQPAEMPEDGYHGE 195 AAVGD LCN+L AGY+V+REYYINDAGNQ+ NL S+EARY+Q LG EMPEDGYHG Sbjct: 146 AAVGDTLCNLLAKAGYDVSREYYINDAGNQIHNLALSVEARYMQALGLEKEMPEDGYHGA 205 Query: 196 DIKGFAKELVAEKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDLTRFRVGFDIWFSETS 255 DI K L E GD + F+R YGL EL K+++DL FRV FD+WFSETS Sbjct: 206 DIIAIGKRLAEEFGDRYAKADEKESYEFYREYGLKYELAKLQKDLESFRVKFDVWFSETS 265 Query: 256 LYENGEVLRSLDELRERGEVYEQDGATWLQTTKYGDDKDRVLIKNDGTYTYLTPDIAYHN 315 LY+NG++ ++L L+ER E++E+DGATW ++ YGDDK+RVLIKNDG+YTYLTPDIAYH Sbjct: 266 LYKNGKIDQALAVLKERDEIFEEDGATWFRSMTYGDDKNRVLIKNDGSYTYLTPDIAYHR 325 Query: 316 DKYGRGYDTMINIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQMVSLFQNGEKVKMSK 375 DK RG+D +INIWGADHHGYIPRMKAA+ ALG D E L V I QMV L+QNGEK+KMSK Sbjct: 326 DKLERGFDKLINIWGADHHGYIPRMKAAIQALGYDKETLEVEIIQMVQLYQNGEKMKMSK 385 Query: 376 RTGKAVTMEDLMDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARIC 435 RTGKAVT+ +LM+EVG+DA+RYFF MRS DSHLDFDMDLA+S SNENPV+Y QYAHAR+C Sbjct: 386 RTGKAVTLRELMEEVGVDAMRYFFAMRSGDSHLDFDMDLAVSKSNENPVYYAQYAHARVC 445 Query: 436 SIFRQAEEQGIVLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGIAASSYAPHRLIRYVY 495 SI RQ EE G L +++Y +T+E E LL+K+GE PA + AA PHR+ Y + Sbjct: 446 SILRQGEELG--LATGGDVNYKLVTSEKEVELLKKLGEFPAVVADAAQKRLPHRITNYAF 503 Query: 496 DLASLFHSYYKAERVITEDXXXXXXXX-XXXXXXXXXXXNVLRLVGVTAPDRM 547 +LA+ HS+Y AE+V+ +D N L +VGV+AP++M Sbjct: 504 ELAAALHSFYNAEKVLNQDNLELSKARYELMKAVRTTLQNALAIVGVSAPEKM 556 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 767,794,065 Number of extensions: 32506752 Number of successful extensions: 81977 Number of sequences better than 1.0e-05: 867 Number of HSP's gapped: 80221 Number of HSP's successfully gapped: 919 Length of query: 547 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 416 Effective length of database: 401,559,609 Effective search space: 167048797344 Effective search space used: 167048797344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)