BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0005.p (82 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240871.1| BH0005~unknown conserved protein [Bacillus halo... 83 2e-15 ref|NP_621718.1| conserved hypothetical protein [Thermoanaerobac... 65 6e-10 ref|NP_560921.1| conserved hypothetical protein [Clostridium per... 62 5e-09 pir||T46554 hypothetical protein X [imported] - Clostridium acet... 62 5e-09 ref|NP_346652.1| Uncharacterized small conserved protein, orthol... 62 5e-09 >ref|NP_240871.1| BH0005~unknown conserved protein [Bacillus halodurans] pir||E83650 hypothetical protein BH0005 [imported] - Bacillus halodurans (strain C-125) dbj|BAA82689.1| 29%-identity [Bacillus halodurans] dbj|BAB03724.1| BH0005 [Bacillus halodurans] Length = 89 Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/82 (47%), Positives = 61/82 (74%) Query: 1 MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVTKN 60 M+IHLGG+ +IRS ++IAI D +E+SS V+K+++ H +++ + I + KSIVVT + Sbjct: 1 MFIHLGGDHVIRSKDVIAILDRDMEQSSGVTKEYLEHHQKNGNIVTISSDLIKSIVVTPD 60 Query: 61 TVYYSPISSSTLKKRAKILLEI 82 T+YYSPISS TLK+R+ + E+ Sbjct: 61 TIYYSPISSVTLKRRSHAVSEL 82 >ref|NP_621718.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] gb|AAM23322.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] Length = 85 Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 56/85 (65%), Gaps = 4/85 (4%) Query: 1 MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVT-- 58 MYIHLGG+ ++ E+I IFD++I +S ++ QF+ +E++ + I +E+ KS ++T Sbjct: 1 MYIHLGGDVVVPDKEIIGIFDMNIVSTSSITLQFLKIAEEEGFVVNISKEKPKSFILTER 60 Query: 59 --KNTVYYSPISSSTLKKRAKILLE 81 K+ +Y SPIS+ TL KRA + E Sbjct: 61 DKKSIIYLSPISAVTLIKRAHKIFE 85 >ref|NP_560921.1| conserved hypothetical protein [Clostridium perfringens] dbj|BAB79711.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 86 Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 4/82 (4%) Query: 1 MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVTK- 59 M++HLG ++ ++I IFDI S + QF+ +E+D +ERI +E+ KS V+ + Sbjct: 1 MFLHLGENVVVPVKDVIGIFDIQTAMYSSDTIQFLRMAEEDGFVERITDEKPKSFVIAEI 60 Query: 60 ---NTVYYSPISSSTLKKRAKI 78 + VY SPISSSTL KR I Sbjct: 61 DKMSKVYLSPISSSTLTKRTDI 82 >pir||T46554 hypothetical protein X [imported] - Clostridium acetobutylicum gb|AAB41129.1| OrfX Length = 87 Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%) Query: 1 MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVT-- 58 M++HLG ++ ++I IFDI S + QF+ SE+D +ERI E KS V+ Sbjct: 1 MFLHLGENVVVPIKDVIGIFDIETTMYSADTSQFLRMSEEDGFVERITNEAPKSFVIAEV 60 Query: 59 --KNTVYYSPISSSTLKKRAKIL 79 K+ ++ SPISSSTL KR++++ Sbjct: 61 DKKSKIFLSPISSSTLSKRSEVV 83 >ref|NP_346652.1| Uncharacterized small conserved protein, ortholog of YAAB B.subtilis [Clostridium acetobutylicum] pir||E96900 uncharacterized small conserved protein, ortholog of YAAB B. subtilis CAC0005 [imported] - Clostridium acetobutylicum gb|AAK77992.1| Uncharacterized small conserved protein, ortholog of YAAB B.subtilis [Clostridium acetobutylicum] Length = 110 Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%) Query: 1 MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVT-- 58 M++HLG ++ ++I IFDI S + QF+ SE+D +ERI E KS V+ Sbjct: 24 MFLHLGENVVVPIKDVIGIFDIETTMYSADTSQFLRMSEEDGFVERITNEAPKSFVIAEV 83 Query: 59 --KNTVYYSPISSSTLKKRAKIL 79 K+ ++ SPISSSTL KR++++ Sbjct: 84 DKKSKIFLSPISSSTLSKRSEVV 106 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.130 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 93,384,403 Number of extensions: 2751592 Number of successful extensions: 9294 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 9286 Number of HSP's successfully gapped: 9 Length of query: 82 Length of database: 757,237,578 Length adjustment: 52 Effective length of query: 30 Effective length of database: 616,052,430 Effective search space: 18481572900 Effective search space used: 18481572900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 120 (50.8 bits)