BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0015.p
         (62 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_979013.1| transcriptional regulator, GntR family [Bacillu...    57   1e-07
ref|NP_832435.1| Transcriptional regulator, GntR family [Bacillu...    56   2e-07
ref|NP_656546.1| aminotran_1_2, Aminotransferase class I and II ...    56   2e-07
ref|NP_831756.1| Transcriptional regulator, GntR family [Bacillu...    54   1e-06

>ref|NP_979013.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987]
 gb|AAS41621.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987]
          Length = 477

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 1   VPLRTLFRAAHKAGLLLNTGDLYDRSDSRHLRLSYVYASPAELETGLPILAGLIRKL 57
           +P++ LF  A   G+LLN G +Y+    +++RLSY YASP ++  G+ +L+ LIRKL
Sbjct: 419 IPMKKLFSEALSKGVLLNPGRIYEEESDQYIRLSYGYASPEQITNGIKLLSELIRKL 475


>ref|NP_832435.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579]
 gb|AAP09636.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579]
          Length = 477

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%)

Query: 1   VPLRTLFRAAHKAGLLLNTGDLYDRSDSRHLRLSYVYASPAELETGLPILAGLIRKL 57
           +P++ LF  A   G+LLN G +Y+    +++RLSY YA+P ++  G+ +L+ LIRKL
Sbjct: 419 IPMKKLFSEALSKGILLNPGRIYEEESDQYIRLSYGYATPEQMTNGIRLLSELIRKL 475


>ref|NP_656546.1| aminotran_1_2, Aminotransferase class I and II [Bacillus anthracis
           A2012]
          Length = 131

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query: 1   VPLRTLFRAAHKAGLLLNTGDLYDRSDSRHLRLSYVYASPAELETGLPILAGLIRKL 57
           +P++ LF  A   G+LLN G +Y+    R++RLSY YAS  ++  G+ +L+ LIRKL
Sbjct: 73  IPMKKLFSEALSKGVLLNPGRIYEEESDRYIRLSYGYASSEQMTNGIKLLSELIRKL 129


>ref|NP_831756.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579]
 gb|AAP08957.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579]
          Length = 480

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 38/56 (67%)

Query: 1   VPLRTLFRAAHKAGLLLNTGDLYDRSDSRHLRLSYVYASPAELETGLPILAGLIRK 56
           +  R+LF  A +  +LLN G LYDRS ++ LRLSY YA+  E+E G+  LA L++K
Sbjct: 425 ISYRSLFDKALQEKVLLNPGTLYDRSANQFLRLSYSYATLEEIEIGIKKLAQLMKK 480


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.140    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 92,272,242
Number of extensions: 2955795
Number of successful extensions: 4780
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4780
Number of HSP's successfully gapped: 4
Length of query: 62
Length of database: 757,237,578
Length adjustment: 34
Effective length of query: 28
Effective length of database: 664,924,212
Effective search space: 18617877936
Effective search space used: 18617877936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)