BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0014.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00110824.1| COG1309: Transcriptional regulator [Nostoc pu... 135 8e-31 ref|NP_772329.1| transcriptional regulatory protein [Bradyrhizob... 131 8e-30 ref|NP_826815.1| putative TetR-family transcriptional regulator ... 129 4e-29 ref|NP_979815.1| trancscriptional regulator MtrR, putative [Baci... 102 5e-21 ref|NP_923134.1| TetR family transcriptional regulatory protein ... 96 6e-19 >ref|ZP_00110824.1| COG1309: Transcriptional regulator [Nostoc punctiforme] Length = 195 Score = 135 bits (339), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 109/178 (61%), Gaps = 3/178 (1%) Query: 12 SSSFLSKTEIMDAAEQTLRRFGPDKTSVTDVAKLLGVSHGTLYRHFPSKAALREAVTERW 71 + S L+ I+DAAE+ L R+G K +V DVA+ L VSHGT+YRHFPSKAALR+AV ERW Sbjct: 2 NDSPLTPERILDAAEEVLCRYGLAKATVVDVARFLEVSHGTIYRHFPSKAALRDAVAERW 61 Query: 72 LEEQIVVPLEQIVKAPADNALAQLKVYIARLIELKRHYAEQDREMFKMYTDVTMEAAELI 131 L ++ +PL I + +A+ QL + +L+ +KR + E+F Y+ + EA ++ Sbjct: 62 L-HRVSIPLAAIAEEQG-SAVEQLHRWFEQLMIMKRQKVLDEPELFATYSAIAQEARGVV 119 Query: 132 EVHIQRIMEQMGILIDRGIQQKRIAQSAATSSLARSLFHATSRFHHPVHAHEWRSASI 189 + HI ++ Q+ +++ GI + ++ A+++F AT RFHHP HA EW I Sbjct: 120 QAHIVELVNQVAAIVESGISSNEFRVTDPQAA-AKAVFQATVRFHHPAHASEWSDPDI 176 >ref|NP_772329.1| transcriptional regulatory protein [Bradyrhizobium japonicum] dbj|BAC50954.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 205 Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 104/174 (59%), Gaps = 3/174 (1%) Query: 16 LSKTEIMDAAEQTLRRFGPDKTSVTDVAKLLGVSHGTLYRHFPSKAALREAVTERWLEEQ 75 L+ I++ E LRR+G K +V DVA+ L VSHG++YRHFPSKA+LREAV +RWL ++ Sbjct: 17 LTPERILEVTEDVLRRYGLAKATVVDVARALDVSHGSVYRHFPSKASLREAVAKRWL-DR 75 Query: 76 IVVPLEQIVKAPADNALAQLKVYIARLIELKRHYAEQDREMFKMYTDVTMEAAELIEVHI 135 I PL QI + A +L ++ L KR D EMF+ Y + EA ++ H Sbjct: 76 IDAPLLQIAREEG-PAPVRLDRWLRTLFAAKRSRVLDDPEMFETYLTLAREACAAVKCHK 134 Query: 136 QRIMEQMGILIDRGIQQKRIAQSAATSSLARSLFHATSRFHHPVHAHEWRSASI 189 +++Q+ ++ G++Q A ++ AR++F AT RFHHP HA EW+ A + Sbjct: 135 DTMIDQIAAILTDGVKQGVFAVDDVKAT-ARAIFDATVRFHHPAHADEWKDADL 187 >ref|NP_826815.1| putative TetR-family transcriptional regulator [Streptomyces avermitilis MA-4680] dbj|BAC73350.1| putative TetR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 195 Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 107/181 (59%), Gaps = 3/181 (1%) Query: 9 VSKSSSFLSKTEIMDAAEQTLRRFGPDKTSVTDVAKLLGVSHGTLYRHFPSKAALREAVT 68 ++ S+ L+ I++A E+ LRR GP K +V DVA+ LGVSHG++YRHF +KAALREAVT Sbjct: 1 MAPSTETLTAERILEATEEVLRRHGPAKATVVDVARALGVSHGSVYRHFRTKAALREAVT 60 Query: 69 ERWLEEQIVVPLEQIVKAPADNALAQLKVYIARLIELKRHYAEQDREMFKMYTDVTMEAA 128 +RWL ++ L IV D +L + + L KRH A D E+F + +T E++ Sbjct: 61 QRWL-DRTAKALSGIVAEDRDPQ-ERLLDWFSALFAAKRHKAGDDPELFATFMVLTGESS 118 Query: 129 ELIEVHIQRIMEQMGILIDRGIQQKRIAQSAATSSLARSLFHATSRFHHPVHAHEWRSAS 188 +++ HI + Q+ ++ G+ + A S + AR+LF AT RFH P +A EW Sbjct: 119 GVVDDHIADLTGQIAAIVRDGVARGTFAASDPVVA-ARALFQATGRFHDPCYAREWEQPG 177 Query: 189 I 189 I Sbjct: 178 I 178 >ref|NP_979815.1| trancscriptional regulator MtrR, putative [Bacillus cereus ATCC 10987] gb|AAS42423.1| trancscriptional regulator MtrR, putative [Bacillus cereus ATCC 10987] Length = 197 Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 102/174 (58%), Gaps = 3/174 (1%) Query: 16 LSKTEIMDAAEQTLRRFGPDKTSVTDVAKLLGVSHGTLYRHFPSKAALREAVTERWLEEQ 75 L+K ++DAAE+ L ++G +T++ +AK L VSH LY +F SKA LR+A+ ERWL + Sbjct: 9 LTKNVVLDAAEKELMKYGWSRTTLVSIAKSLDVSHAALYSYFRSKATLRDAILERWL-FK 67 Query: 76 IVVPLEQIVKAPADNALAQLKVYIARLIELKRHYAEQDREMFKMYTDVTMEAAELIEVHI 135 LE+I + + L+ + RL +LK+ ++ E+F + + + + ++I+ H Sbjct: 68 YSDQLEKIAGKDGETE-SILQEWFFRLFQLKKKELLENEELFTLNSSLVQQKNKVIQKHE 126 Query: 136 QRIMEQMGILIDRGIQQKRIAQSAATSSLARSLFHATSRFHHPVHAHEWRSASI 189 +R++ Q+ +I+RGI++ I + + LA +LF S F+HP + W+ I Sbjct: 127 ERLVGQLENVINRGIERNEIEKQDSL-FLAHTLFWLLSVFYHPAFSERWKEERI 179 >ref|NP_923134.1| TetR family transcriptional regulatory protein [Gloeobacter violaceus] dbj|BAC88129.1| TetR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 192 Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 5/163 (3%) Query: 17 SKTEIMDAAEQTLRRFGPDKTSVTDVAKLLGVSHGTLYRHFPSKAALREAVTERWLEEQI 76 +++ I++AAE LRR GP K +VTDVA+ LG+SH +YRHF SKA L +AV ERWL + Sbjct: 5 TRSRILEAAELLLRRHGPAKLTVTDVARHLGMSHANVYRHFASKADLLDAVAERWL-HTV 63 Query: 77 VVPLEQIVKAPADNALAQ-LKVYIARLIELKRHYAEQDREMFKMYTDVTMEAAELIEVHI 135 LE I A AD A+ L+ + L + KR D E F MY V A ++ H+ Sbjct: 64 SGALEPI--ALADGPAAERLEDWAVGLWQQKRRKISDDPEHFAMYHGVAEAARGVVARHV 121 Query: 136 QRIMEQMGILIDRGIQQKRIAQSAATSSLARSLFHATSRFHHP 178 + ++ Q+ ++ G + Q ++ AR++++AT RFHHP Sbjct: 122 ETLLGQLERILADGAASEEF-QMTDPAAAARAVWNATVRFHHP 163 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.129 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 230,904,474 Number of extensions: 7635923 Number of successful extensions: 25940 Number of sequences better than 1.0e-05: 25 Number of HSP's gapped: 25979 Number of HSP's successfully gapped: 25 Length of query: 209 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 89 Effective length of database: 431,425,698 Effective search space: 38396887122 Effective search space used: 38396887122 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)