BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0011.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_831726.1| Two-component response regulator [Bacillus cere... 259 2e-68 ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus... 254 6e-67 ref|NP_844363.1| DNA-binding response regulator [Bacillus anthra... 254 9e-67 ref|NP_655819.1| response_reg, Response regulator receiver domai... 254 9e-67 ref|NP_845560.1| DNA-binding response regulator [Bacillus anthra... 207 2e-52 >ref|NP_831726.1| Two-component response regulator [Bacillus cereus ATCC 14579] gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 225 Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 117/198 (59%), Positives = 157/198 (79%) Query: 3 EVFGASDGIEALRLLEDNGVDLAVIDVMMPNMDGWELCKELRRSYDIPILMLTAKGETSQ 62 + + A DG++AL+ ++D VD+ ++D+MMPNMDG+++C ELR+ YDIP+LMLTAKGETSQ Sbjct: 28 QTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFDVCFELRKYYDIPVLMLTAKGETSQ 87 Query: 63 IVKGFELGTDDYLVKPFEPPVLIARVKALLKRYQISAAQSVNVGGLRMNRKTYEVTADQG 122 VKGF LGTDDYLVKPF+P L+ RVKALLKRYQI+ +QS+ VG + +NRKT+EVT+ + Sbjct: 88 KVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQSIQVGNVLLNRKTFEVTSGEQ 147 Query: 123 SITLPXXXXXXXXXXASYPGQTLTRDRLIEEVWGYDFEGNERTLDVHVGRLRDRFPREDY 182 ++TLP + G+T +R++LIEE+WGYDFEGNERTLDVH+ RLR++F E Sbjct: 148 TVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWGYDFEGNERTLDVHINRLREKFQEEQS 207 Query: 183 GFAIRTVRGLGYRLEVGK 200 F+I+T+RGLGYRLEV K Sbjct: 208 KFSIKTIRGLGYRLEVSK 225 >ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 254 bits (650), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 117/198 (59%), Positives = 154/198 (77%) Query: 3 EVFGASDGIEALRLLEDNGVDLAVIDVMMPNMDGWELCKELRRSYDIPILMLTAKGETSQ 62 + + A DG++AL+ + + VD+ ++D+MMPNMDG+++C ELR+ YDIPILMLTAKGETSQ Sbjct: 28 QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDVCFELRKYYDIPILMLTAKGETSQ 87 Query: 63 IVKGFELGTDDYLVKPFEPPVLIARVKALLKRYQISAAQSVNVGGLRMNRKTYEVTADQG 122 VKGF LGTDDYLVKPF+P L+ RVKALLKRYQI+ +QS+ VG + +NRKT+EV + Sbjct: 88 KVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQSIQVGNVLLNRKTFEVITGEQ 147 Query: 123 SITLPXXXXXXXXXXASYPGQTLTRDRLIEEVWGYDFEGNERTLDVHVGRLRDRFPREDY 182 ++TLP S G+T +R++LIE+VWGYDFEGNERTLDVH+ RLR++F E Sbjct: 148 TVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYDFEGNERTLDVHINRLREKFQEEKS 207 Query: 183 GFAIRTVRGLGYRLEVGK 200 F+I+T+RGLGYRLEV K Sbjct: 208 KFSIKTIRGLGYRLEVSK 225 >ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames] Length = 228 Score = 254 bits (649), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 117/198 (59%), Positives = 154/198 (77%) Query: 3 EVFGASDGIEALRLLEDNGVDLAVIDVMMPNMDGWELCKELRRSYDIPILMLTAKGETSQ 62 + + A DG++AL+ + VD+ ++D+MMPNMDG+++C ELR+ YDIPIL+LTAKGETSQ Sbjct: 31 QTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDVCFELRKYYDIPILILTAKGETSQ 90 Query: 63 IVKGFELGTDDYLVKPFEPPVLIARVKALLKRYQISAAQSVNVGGLRMNRKTYEVTADQG 122 VKGF LGTDDYLVKPF+P L+ RVKALLKRYQI+ +QS+ VG + +NRKT+EVT + Sbjct: 91 KVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQSIQVGTVLLNRKTFEVTIGEQ 150 Query: 123 SITLPXXXXXXXXXXASYPGQTLTRDRLIEEVWGYDFEGNERTLDVHVGRLRDRFPREDY 182 ++TLP S G+T +R++LIE+VWGYDFEGNERTLDVH+ RLR++F E Sbjct: 151 TVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYDFEGNERTLDVHINRLREKFQEEKS 210 Query: 183 GFAIRTVRGLGYRLEVGK 200 F+I+T+RGLGYRLEV K Sbjct: 211 KFSIKTIRGLGYRLEVSK 228 >ref|NP_655819.1| response_reg, Response regulator receiver domain [Bacillus anthracis A2012] Length = 254 Score = 254 bits (648), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 117/198 (59%), Positives = 154/198 (77%) Query: 3 EVFGASDGIEALRLLEDNGVDLAVIDVMMPNMDGWELCKELRRSYDIPILMLTAKGETSQ 62 + + A DG++AL+ + VD+ ++D+MMPNMDG+++C ELR+ YDIPIL+LTAKGETSQ Sbjct: 57 QTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDVCFELRKYYDIPILILTAKGETSQ 116 Query: 63 IVKGFELGTDDYLVKPFEPPVLIARVKALLKRYQISAAQSVNVGGLRMNRKTYEVTADQG 122 VKGF LGTDDYLVKPF+P L+ RVKALLKRYQI+ +QS+ VG + +NRKT+EVT + Sbjct: 117 KVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQSIQVGTVLLNRKTFEVTIGEQ 176 Query: 123 SITLPXXXXXXXXXXASYPGQTLTRDRLIEEVWGYDFEGNERTLDVHVGRLRDRFPREDY 182 ++TLP S G+T +R++LIE+VWGYDFEGNERTLDVH+ RLR++F E Sbjct: 177 TVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYDFEGNERTLDVHINRLREKFQEEKS 236 Query: 183 GFAIRTVRGLGYRLEVGK 200 F+I+T+RGLGYRLEV K Sbjct: 237 KFSIKTIRGLGYRLEVSK 254 >ref|NP_845560.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gb|AAP27046.1| DNA-binding response regulator [Bacillus anthracis str. Ames] Length = 225 Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 100/196 (51%), Positives = 136/196 (69%) Query: 3 EVFGASDGIEALRLLEDNGVDLAVIDVMMPNMDGWELCKELRRSYDIPILMLTAKGETSQ 62 +VF A DG A +LE + LA++D+MMP +DG+ LC+E+R+ +DIP+++LTAK + Sbjct: 29 KVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGYTLCEEIRKYHDIPVILLTAKDQLVD 88 Query: 63 IVKGFELGTDDYLVKPFEPPVLIARVKALLKRYQISAAQSVNVGGLRMNRKTYEVTADQG 122 KGF GTDDY+VKPFEP +I R+KALL+RYQ+ +A + + G ++RK EV + Sbjct: 89 KEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADIITLHGTTIDRKGVEVKCNGQ 148 Query: 123 SITLPXXXXXXXXXXASYPGQTLTRDRLIEEVWGYDFEGNERTLDVHVGRLRDRFPREDY 182 +I LP ASYPG+T +R+ LIE VWG DFEG+ERT+DVHV RLRDRF + Sbjct: 149 TILLPLKEFELLSQLASYPGRTFSREELIELVWGMDFEGDERTVDVHVKRLRDRFSKRTD 208 Query: 183 GFAIRTVRGLGYRLEV 198 F I TVRGLGY+LE+ Sbjct: 209 DFQITTVRGLGYKLEL 224 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 273,945,618 Number of extensions: 10056726 Number of successful extensions: 38961 Number of sequences better than 1.0e-05: 4253 Number of HSP's gapped: 36649 Number of HSP's successfully gapped: 4272 Length of query: 200 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 81 Effective length of database: 434,140,797 Effective search space: 35165404557 Effective search space used: 35165404557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)