BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0010.p (583 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_978355.1| ABC transporter, ATP-binding/permease protein [... 632 e-180 ref|NP_831725.1| Multidrug resistance ABC transporter ATP-bindin... 619 e-176 ref|NP_472216.1| similar to ABC transporter (ATP-binding protein... 563 e-159 ref|NP_466267.1| similar to ABC transporter (ATP-binding protein... 560 e-158 ref|NP_391362.1| similar to ABC transporter (ATP-binding protein... 549 e-155 >ref|NP_978355.1| ABC transporter, ATP-binding/permease protein [Bacillus cereus ATCC 10987] gb|AAS40963.1| ABC transporter, ATP-binding/permease protein [Bacillus cereus ATCC 10987] Length = 586 Score = 632 bits (1630), Expect = e-180, Method: Compositional matrix adjust. Identities = 318/549 (57%), Positives = 398/549 (72%) Query: 1 MISTLVGLVIPMFTKNLVDGFSLASVSKLQXXXXXXXXXXXXXXXXVSIYLLNYVGQKAV 60 ++ST L IPM TK LVD FSL+S+S Q +SIYLLNY+GQK V Sbjct: 38 LLSTGASLFIPMLTKGLVDNFSLSSISTGQIVGLVAFFIMQTIAAGLSIYLLNYIGQKIV 97 Query: 61 AGLRDRLWRKFLVLPVAYYNDNRTGESVSRMTNDTGIIKTLISEHLASLFTGVISIVGSI 120 AGLR+RLW+K L+LPV+YY+ NRTG+++SRMTNDTG++KTLISEHL++L TG ISIVGS+ Sbjct: 98 AGLRERLWKKVLILPVSYYDQNRTGDTISRMTNDTGVVKTLISEHLSNLLTGGISIVGSL 157 Query: 121 AVLLYLNWQMTLVLFTVLPLSALILVPLGRQMYKISKGTQDETASFTATLSGVLSEIRLV 180 VL L+W+MTL+L TV+PLS LILVPLGR+MYKISK QDETASFT+ L+ VLSEIRLV Sbjct: 158 IVLFVLDWKMTLLLLTVIPLSVLILVPLGRKMYKISKALQDETASFTSVLTQVLSEIRLV 217 Query: 181 KSSGAEQKEYEAGRTGIMNLLSFGIREGKISAMISPXXXXXXXXXXXXXIGYGGMQVSSG 240 KSS E++EYE G GI LL FG++EGK+ A+ISP +GYGGM+VSSG Sbjct: 218 KSSNTEKREYETGNKGIEKLLQFGLKEGKVQALISPVMSFVLMALLVIIVGYGGMRVSSG 277 Query: 241 ALTAGELVAFILYLIQIVMPXXXXXXXXXXIQKAKGASERIIETLAADEEIYEGVEEAKS 300 ALT GELVAFILYL+QI+MP QKA GA+ERI L + E +E + + Sbjct: 278 ALTTGELVAFILYLVQIIMPMSQLSMFFTQFQKAIGATERINTILEYEVEDHETGVKVTN 337 Query: 301 AEEPIVIDDLSFGYTTGDPVLSRVSFSMLPGQVTAIVGPSGGGKTTLFSLLERFYEPQSG 360 A++PIV++++ F Y + VL + F++ G+VTAIVGPSG GKTTLFSLLERFYEP SG Sbjct: 338 AKQPIVLENVYFEYNEEEQVLKNIDFTIESGKVTAIVGPSGSGKTTLFSLLERFYEPTSG 397 Query: 361 GIKLGAKPISTFSLRSWRKLIGYVSQESPLLSGTIADNLAYGLNREVGVEELRRAAAMAY 420 IKLG I+++SL+SWR+ IGYVSQ+SPL+ GTI DN+ YG+ EV EE+ + AAMAY Sbjct: 398 AIKLGKDAITSYSLQSWRRQIGYVSQDSPLIDGTIRDNICYGVEGEVTDEEIEKVAAMAY 457 Query: 421 ADGFISELPHGYDTDVGERGVKLSXXXXXXXXXXXXXXXDPKILMLDEATASLDSQSEAV 480 D FI +LP+GY T+VGERGVKLS +P+ILMLDEAT+SLDS+SE+V Sbjct: 458 VDAFIHDLPNGYATEVGERGVKLSGGQRQRIAIARALLRNPQILMLDEATSSLDSKSESV 517 Query: 481 VQKALSNLMKGRTTIVIAHRLATVVNADQIIFMEKGRITGRGTXXXXXXXXXXXXXFAEQ 540 VQKAL+NLMKGRTT+VIAHRL+TVV+AD+IIF+EKG +TG GT FA Q Sbjct: 518 VQKALNNLMKGRTTLVIAHRLSTVVDADKIIFIEKGNLTGSGTHDELLRTHDMYREFATQ 577 Query: 541 QLQLNSPVL 549 QL++ VL Sbjct: 578 QLKIKEGVL 586 >ref|NP_831725.1| Multidrug resistance ABC transporter ATP-binding and permease protein [Bacillus cereus ATCC 14579] gb|AAP08926.1| Multidrug resistance ABC transporter ATP-binding and permease protein [Bacillus cereus ATCC 14579] Length = 538 Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust. Identities = 310/538 (57%), Positives = 388/538 (72%) Query: 12 MFTKNLVDGFSLASVSKLQXXXXXXXXXXXXXXXXVSIYLLNYVGQKAVAGLRDRLWRKF 71 M TK LVD FSL+S+S Q +SIYLLNY+GQK VAGLR+RLW+K Sbjct: 1 MLTKGLVDNFSLSSISAGQIVGLVAFFVMQTIAAGLSIYLLNYIGQKIVAGLRERLWKKV 60 Query: 72 LVLPVAYYNDNRTGESVSRMTNDTGIIKTLISEHLASLFTGVISIVGSIAVLLYLNWQMT 131 L+LPV+Y + NRTG++++RMTNDTG++KTLISEHL++L T ISIVGS+ VL L+W+MT Sbjct: 61 LILPVSYSDQNRTGDTITRMTNDTGVVKTLISEHLSNLLTAGISIVGSLIVLFVLDWKMT 120 Query: 132 LVLFTVLPLSALILVPLGRQMYKISKGTQDETASFTATLSGVLSEIRLVKSSGAEQKEYE 191 +L TV+PLS LILVPLGR+MYKISK QDETASFT+ L+ VLSEIRLVKSS E++EYE Sbjct: 121 ALLLTVIPLSVLILVPLGRKMYKISKALQDETASFTSVLTQVLSEIRLVKSSNTEKREYE 180 Query: 192 AGRTGIMNLLSFGIREGKISAMISPXXXXXXXXXXXXXIGYGGMQVSSGALTAGELVAFI 251 G TGI LL FG++EGK+ A+ISP +GYGGM+VSSGALT GELVAFI Sbjct: 181 TGNTGIQKLLQFGLKEGKVQALISPVMSFVLMALLVIIVGYGGMRVSSGALTTGELVAFI 240 Query: 252 LYLIQIVMPXXXXXXXXXXIQKAKGASERIIETLAADEEIYEGVEEAKSAEEPIVIDDLS 311 LYL+QIVMP QKA GA+ERI L + E +E + +A++PIV++++ Sbjct: 241 LYLVQIVMPMSQLSMFFTQFQKAIGATERISTILEYEVEDHETGVKVTNAKQPIVLENVH 300 Query: 312 FGYTTGDPVLSRVSFSMLPGQVTAIVGPSGGGKTTLFSLLERFYEPQSGGIKLGAKPIST 371 F Y + VL + F++ G+VTAIVGPSG GKTTLFSLLERFYEP SG IKLG + I++ Sbjct: 301 FEYNEEEQVLKNIDFTIESGKVTAIVGPSGSGKTTLFSLLERFYEPTSGAIKLGEESITS 360 Query: 372 FSLRSWRKLIGYVSQESPLLSGTIADNLAYGLNREVGVEELRRAAAMAYADGFISELPHG 431 +SL SWR+ IGYVSQ+SPL+ GTI DN+ YG+ EV EE+ + AAMAY D FI +LP+G Sbjct: 361 YSLESWRRQIGYVSQDSPLIDGTIRDNICYGVEGEVTDEEIEKVAAMAYVDAFIHDLPNG 420 Query: 432 YDTDVGERGVKLSXXXXXXXXXXXXXXXDPKILMLDEATASLDSQSEAVVQKALSNLMKG 491 Y T+VGERGVKLS +P+ILMLDEAT+SLDS+SE+VVQKAL+NLMKG Sbjct: 421 YATEVGERGVKLSGGQRQRIAIARALLRNPQILMLDEATSSLDSKSESVVQKALNNLMKG 480 Query: 492 RTTIVIAHRLATVVNADQIIFMEKGRITGRGTXXXXXXXXXXXXXFAEQQLQLNSPVL 549 RTT+VIAHRL+TVV+AD+IIF+EKG +TG GT FA QQL++ L Sbjct: 481 RTTLVIAHRLSTVVDADKIIFIEKGNLTGSGTHDELLQTHDMYREFATQQLKIKEGAL 538 >ref|NP_472216.1| similar to ABC transporter (ATP-binding protein) [Listeria innocua] pir||AB1793 ABC transporter (ATP-binding protein) homolog lin2888 [imported] - Listeria innocua (strain Clip11262) emb|CAC98114.1| lin2888 [Listeria innocua] Length = 575 Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust. Identities = 281/543 (51%), Positives = 375/543 (69%) Query: 1 MISTLVGLVIPMFTKNLVDGFSLASVSKLQXXXXXXXXXXXXXXXXVSIYLLNYVGQKAV 60 +++T+ GLV+P+FTKNL+DGFS+AS+ SI+LLNY+GQK V Sbjct: 33 VVTTVAGLVVPLFTKNLIDGFSIASLDVKMVALIVLAFILQAITNGFSIFLLNYMGQKVV 92 Query: 61 AGLRDRLWRKFLVLPVAYYNDNRTGESVSRMTNDTGIIKTLISEHLASLFTGVISIVGSI 120 A +R+RLWRK + LPV+Y+++ +TGE VSRM NDT ++K LI++HL TG+IS+VG+I Sbjct: 93 ATIRERLWRKIVHLPVSYFDNTKTGEMVSRMVNDTVVVKELIADHLPQFVTGIISVVGAI 152 Query: 121 AVLLYLNWQMTLVLFTVLPLSALILVPLGRQMYKISKGTQDETASFTATLSGVLSEIRLV 180 +L +++W+MTL++ +P++AL++ PLG++M+KISKG Q+ETA FT ++S LSE RLV Sbjct: 153 IILFFMDWKMTLIILIAVPITALVVAPLGQKMFKISKGLQNETADFTGSISQTLSEARLV 212 Query: 181 KSSGAEQKEYEAGRTGIMNLLSFGIREGKISAMISPXXXXXXXXXXXXXIGYGGMQVSSG 240 K+S AE +E EAG GI L FGIRE K+ A++ P IGYGG++VS+G Sbjct: 213 KASNAETRETEAGHKGINRLFGFGIREAKVVAVLGPLIFFVVMGVIVGIIGYGGIRVSAG 272 Query: 241 ALTAGELVAFILYLIQIVMPXXXXXXXXXXIQKAKGASERIIETLAADEEIYEGVEEAKS 300 +T G L+AF+LYL QI++P +QKAKGA+ERI + L EE ++ ++ Sbjct: 273 TMTTGTLIAFLLYLFQIIVPVTSFATFFAQLQKAKGATERIADILNEAEEDFDAGKKVDV 332 Query: 301 AEEPIVIDDLSFGYTTGDPVLSRVSFSMLPGQVTAIVGPSGGGKTTLFSLLERFYEPQSG 360 + + I D+SF Y G+P+L VSF PG+V A GPSGGGK+TLF++LERFY+P++G Sbjct: 333 SGKTIRATDISFSYNEGEPILKDVSFDTKPGEVIAFAGPSGGGKSTLFAILERFYQPKTG 392 Query: 361 GIKLGAKPISTFSLRSWRKLIGYVSQESPLLSGTIADNLAYGLNREVGVEELRRAAAMAY 420 I +G P+S S+ SWR IGYVSQES +LSGTI DNL YGL+RE+ EEL A +AY Sbjct: 393 EILVGDIPLSEISINSWRSQIGYVSQESAMLSGTIRDNLCYGLDREINEEELWNVAKLAY 452 Query: 421 ADGFISELPHGYDTDVGERGVKLSXXXXXXXXXXXXXXXDPKILMLDEATASLDSQSEAV 480 ADGFISELP T+VGERGVKLS +P ILMLDEATASLDSQSE + Sbjct: 453 ADGFISELPDKMATEVGERGVKLSGGQRQRIAIARAFLRNPNILMLDEATASLDSQSEQI 512 Query: 481 VQKALSNLMKGRTTIVIAHRLATVVNADQIIFMEKGRITGRGTXXXXXXXXXXXXXFAEQ 540 VQ+AL+NLM+GRTT VIAHRL+T+VNADQI+F+E G ITGRGT FAEQ Sbjct: 513 VQQALANLMEGRTTFVIAHRLSTIVNADQILFIEHGEITGRGTHSELVASHPLYASFAEQ 572 Query: 541 QLQ 543 QL+ Sbjct: 573 QLK 575 >ref|NP_466267.1| similar to ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AH1417 ABC transporter (ATP-binding protein) homolog lmo2745 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00958.1| lmo2745 [Listeria monocytogenes] Length = 575 Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust. Identities = 280/543 (51%), Positives = 375/543 (69%) Query: 1 MISTLVGLVIPMFTKNLVDGFSLASVSKLQXXXXXXXXXXXXXXXXVSIYLLNYVGQKAV 60 +I+T+ GLV+P+FTKNL+DGFS+AS+ SI+LLNY+GQK V Sbjct: 33 VITTVAGLVVPLFTKNLIDGFSIASLDVKMIALIVLAFILQAITNGFSIFLLNYMGQKVV 92 Query: 61 AGLRDRLWRKFLVLPVAYYNDNRTGESVSRMTNDTGIIKTLISEHLASLFTGVISIVGSI 120 A +R+RLW+K + LPV+Y+++ +TGE VSRM NDT ++K LI++HL TG+IS+VG+I Sbjct: 93 ATIRERLWKKIVHLPVSYFDNTKTGEMVSRMVNDTVVVKELIADHLPQFVTGIISVVGAI 152 Query: 121 AVLLYLNWQMTLVLFTVLPLSALILVPLGRQMYKISKGTQDETASFTATLSGVLSEIRLV 180 +L +++W+MTL++ +P++AL++ PLG++M+KISKG Q+ETA+FT ++S LSE RLV Sbjct: 153 IILFFMDWKMTLIILVAVPITALVVAPLGQKMFKISKGLQNETANFTGSISQTLSEARLV 212 Query: 181 KSSGAEQKEYEAGRTGIMNLLSFGIREGKISAMISPXXXXXXXXXXXXXIGYGGMQVSSG 240 K+S AE E EAG GI L FGIRE K+ A++ P IGYGG++VS+G Sbjct: 213 KASNAETLETEAGHQGINRLFGFGIREAKVVAVLGPLIFFVVMGVIVGIIGYGGIRVSAG 272 Query: 241 ALTAGELVAFILYLIQIVMPXXXXXXXXXXIQKAKGASERIIETLAADEEIYEGVEEAKS 300 +T G L+AF+LYL QI++P +QKAKGA+ERI + L EE ++ ++ Sbjct: 273 TMTTGTLIAFLLYLFQIIVPVTSFATFFAQLQKAKGATERIADILNETEEDFDAGKKVDV 332 Query: 301 AEEPIVIDDLSFGYTTGDPVLSRVSFSMLPGQVTAIVGPSGGGKTTLFSLLERFYEPQSG 360 + + I D+SF Y G+P+L VSF PG+V A GPSGGGK+TLF++LERFY+P++G Sbjct: 333 SGKTIRASDISFSYNEGEPILKHVSFDTKPGEVIAFAGPSGGGKSTLFAILERFYQPKTG 392 Query: 361 GIKLGAKPISTFSLRSWRKLIGYVSQESPLLSGTIADNLAYGLNREVGVEELRRAAAMAY 420 I +G P+S S+ SWR IGYVSQES +LSGTI DNL YGL+RE+ +EL A +AY Sbjct: 393 EILVGDIPLSEISINSWRTQIGYVSQESAMLSGTIRDNLCYGLDREITEDELWNVAKLAY 452 Query: 421 ADGFISELPHGYDTDVGERGVKLSXXXXXXXXXXXXXXXDPKILMLDEATASLDSQSEAV 480 ADGFISELP T+VGERGVKLS +P ILMLDEATASLDSQSE + Sbjct: 453 ADGFISELPDKMATEVGERGVKLSGGQRQRIAIARAFLRNPNILMLDEATASLDSQSEQI 512 Query: 481 VQKALSNLMKGRTTIVIAHRLATVVNADQIIFMEKGRITGRGTXXXXXXXXXXXXXFAEQ 540 VQ+AL+NLM+GRTT VIAHRL+T+VNADQI+F+E G ITGRGT FAEQ Sbjct: 513 VQQALANLMEGRTTFVIAHRLSTIVNADQILFIEHGEITGRGTHSELVASHPLYASFAEQ 572 Query: 541 QLQ 543 QL+ Sbjct: 573 QLK 575 >ref|NP_391362.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||D70031 ABC transporter (ATP-binding protein) homolog yvcC - Bacillus subtilis emb|CAB08051.1| hypothetical protein [Bacillus subtilis] emb|CAB15487.1| yvcC [Bacillus subtilis subsp. subtilis str. 168] Length = 589 Score = 549 bits (1415), Expect = e-155, Method: Compositional matrix adjust. Identities = 284/546 (52%), Positives = 379/546 (69%) Query: 1 MISTLVGLVIPMFTKNLVDGFSLASVSKLQXXXXXXXXXXXXXXXXVSIYLLNYVGQKAV 60 +++TLV L+IP+ TK LVDGFS++++S Q + Y LNY GQK + Sbjct: 37 VVTTLVSLLIPLLTKQLVDGFSMSNLSGTQIGLIALVFFVQAGLSAYATYALNYNGQKII 96 Query: 61 AGLRDRLWRKFLVLPVAYYNDNRTGESVSRMTNDTGIIKTLISEHLASLFTGVISIVGSI 120 +GLR+ LW+K + LPV+Y++ N +GE+VSR+TNDT ++K LI+ H++ TG+IS++GS+ Sbjct: 97 SGLRELLWKKLIKLPVSYFDTNASGETVSRVTNDTMVVKELITTHISGFITGIISVIGSL 156 Query: 121 AVLLYLNWQMTLVLFTVLPLSALILVPLGRQMYKISKGTQDETASFTATLSGVLSEIRLV 180 +L +NW++TL++ V+PL+ALILVP+GR+M+ IS+ TQDETA FT L+ +L EIRLV Sbjct: 157 TILFIMNWKLTLLVLVVVPLAALILVPIGRKMFSISRETQDETARFTGLLNQILPEIRLV 216 Query: 181 KSSGAEQKEYEAGRTGIMNLLSFGIREGKISAMISPXXXXXXXXXXXXXIGYGGMQVSSG 240 K+S AE EY G+ GI +L G+RE K+ +++ P IGYGGMQVSSG Sbjct: 217 KASNAEDVEYGRGKMGISSLFKLGVREAKVQSLVGPLISLVLMAALVAVIGYGGMQVSSG 276 Query: 241 ALTAGELVAFILYLIQIVMPXXXXXXXXXXIQKAKGASERIIETLAADEEIYEGVEEAKS 300 LTAG LVAFILYL QI+MP +QK+ GA+ER+IE LA +EE ++ ++ Sbjct: 277 ELTAGALVAFILYLFQIIMPMGQITTFFTQLQKSIGATERMIEILAEEEEDTVTGKQIEN 336 Query: 301 AEEPIVIDDLSFGYTTGDPVLSRVSFSMLPGQVTAIVGPSGGGKTTLFSLLERFYEPQSG 360 A PI +D +SFGY +L VS + G+VTAIVGPSGGGKTTLF LLERFY P +G Sbjct: 337 AHLPIQLDRVSFGYKPDQLILKEVSAVIEAGKVTAIVGPSGGGKTTLFKLLERFYSPTAG 396 Query: 361 GIKLGAKPISTFSLRSWRKLIGYVSQESPLLSGTIADNLAYGLNREVGVEELRRAAAMAY 420 I+LG +P+ T+SL SWR+ IGYVSQESPL+SGTI +N+ YGL R+V E+ +AA MAY Sbjct: 397 TIRLGDEPVDTYSLESWREHIGYVSQESPLMSGTIRENICYGLERDVTDAEIEKAAEMAY 456 Query: 421 ADGFISELPHGYDTDVGERGVKLSXXXXXXXXXXXXXXXDPKILMLDEATASLDSQSEAV 480 A FI ELP+ +DT+VGERG+ LS +P ILMLDEAT+SLDSQSE Sbjct: 457 ALNFIKELPNQFDTEVGERGIMLSGGQRQRIAIARALLRNPSILMLDEATSSLDSQSEKS 516 Query: 481 VQKALSNLMKGRTTIVIAHRLATVVNADQIIFMEKGRITGRGTXXXXXXXXXXXXXFAEQ 540 VQ+AL LM+GRTTIVIAHRL+TVV+ADQ++F+EKG ITGRGT FAEQ Sbjct: 517 VQQALEVLMEGRTTIVIAHRLSTVVDADQLLFVEKGEITGRGTHHELMASHGLYRDFAEQ 576 Query: 541 QLQLNS 546 QL++N+ Sbjct: 577 QLKMNA 582 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 689,004,521 Number of extensions: 24652084 Number of successful extensions: 131768 Number of sequences better than 1.0e-05: 8186 Number of HSP's gapped: 123012 Number of HSP's successfully gapped: 8841 Length of query: 583 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 452 Effective length of database: 401,559,609 Effective search space: 181504943268 Effective search space used: 181504943268 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)