BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0009.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAF66405.1| unknown [environmental sequence] 98 1e-19 ref|ZP_00098569.1| COG0746: Molybdopterin-guanine dinucleotide b... 96 7e-19 ref|NP_951837.1| formate dehydrogenase accessory protein FdhD [G... 96 8e-19 ref|ZP_00080236.1| COG1526: Uncharacterized protein required for... 91 2e-17 ref|ZP_00081809.1| COG1763: Molybdopterin-guanine dinucleotide b... 89 7e-17 >gb|EAF66405.1| unknown [environmental sequence] Length = 203 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 18/211 (8%) Query: 6 GILLSGGYSRRMGRDKALLGLGGRPVIARLADELSKVAAGPVIACGEQER-EEYRFL-GL 63 G++L+GG S R+GRDKAL G+P+I+ + +SK I E R ++ F+ + Sbjct: 7 GVILAGGKSERLGRDKALESFNGKPLISNVICAISKHVNNISIVINENTRKKDLSFIDDV 66 Query: 64 TQVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDLIRN 123 + + D + G L G+++ L +SP + +V ACD+PF S + + +M S+ ++ Sbjct: 67 SFIVDKFKNAGSLGGIYSGLEKSPNQNIIVFACDMPFISGKIISFMKSNISQKH------ 120 Query: 124 YSGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECLDALEVLYIPE 183 D +PE+ G +Y K LP++++ L + +++ + D + E Sbjct: 121 --------DIIIPET-NGFKHSTHAIYSKNCLPIIKKQLIKKEYKISKIFDKCNTKILKE 171 Query: 184 AGFTGGP-EPSPLYNMNTPEDYAAALELVST 213 +N+N D A +++S Sbjct: 172 ENINKIELNTKSFFNINYDTDLDKANQILSN 202 >ref|ZP_00098569.1| COG0746: Molybdopterin-guanine dinucleotide biosynthesis protein A [Desulfitobacterium hafniense] Length = 207 Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 20/201 (9%) Query: 5 SGILLSGGYSRRMGRDKALLGLGGRPVIARLADELSKVAAGPVIACGEQEREEYRFLGLT 64 +GI+L+GG S RMG +KA + G P+I + V A +I+ E Y G+ Sbjct: 13 TGIILAGGKSSRMGCNKAFIEWDGAPLIEHSLAVFNAVFAEVMISSNHPEL--YADYGVK 70 Query: 65 QVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDLIRNY 124 + D YP GPL GL A L ++ + + AACD+PF + + +R+M Sbjct: 71 VIKDNYPDHGPLGGLEACLREARYDHAFFAACDMPFLNTKVIRFM--------------- 115 Query: 125 SGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECLDAL-EVLYIPE 183 G ++ ++ + I G V PL YHK LP+L E+L + ++ + + V Y+ E Sbjct: 116 -AGEIEGESILVPEIEGVVHPLHAFYHKNCLPLLAESLKAKHLKLTKLVQQYSRVRYLRE 174 Query: 184 AGFTGGPEPSP-LYNMNTPED 203 F P L NMNTP++ Sbjct: 175 KDFRDFPAIHLFLSNMNTPQE 195 >ref|NP_951837.1| formate dehydrogenase accessory protein FdhD [Geobacter sulfurreducens PCA] gb|AAR34110.1| formate dehydrogenase accessory protein FdhD [Geobacter sulfurreducens PCA] Length = 478 Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%) Query: 1 MPQFSGILLSGGYSRRMGRDKALLGLGGRPVIARLADELSKVAAGPVIACGEQEREEYRF 60 +P +G++L+GG S RMG +KALL G I + +LS+ ++ E +Y F Sbjct: 268 IPGVTGVILAGGQSSRMGSNKALLPYRGGRFIESIHRQLSEYFDEVIVVTNTPE--QYEF 325 Query: 61 LGLTQVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDL 120 L +V D++ G G LAG+HA L S + V ACD+P+ + + +R+ ++S A+PG L Sbjct: 326 LPCRKVTDIHEGMGALAGIHAGLHHSSNPAAFVVACDMPYLNGDLIRH-LASMADPGGVL 384 Query: 121 IRNYSGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECLDALEVLY 180 I PES TG ++PL +Y K L +E L + R++ V Sbjct: 385 I--------------PESPTG-LEPLHAVYGKGCLAAIEATLLSGQRRIVSFFGRTNVNR 429 Query: 181 IPEAGFTG-GPEPSPLYNMNTPEDY 204 + A PE + N+NTP DY Sbjct: 430 VNVAQIAAFDPEFNSFRNINTPTDY 454 >ref|ZP_00080236.1| COG1526: Uncharacterized protein required for formate dehydrogenase activity [Geobacter metallireducens] Length = 479 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 33/212 (15%) Query: 1 MPQFSGILLSGGYSRRMGRDKALLGL-GGRPV------IARLADELSKVAAGPVIACGEQ 53 +P +G++L+GG SRRMG +KALL GGR + +A + DE+ V P Sbjct: 271 IPGITGVILAGGQSRRMGSNKALLPYKGGRFIEAIHRQLAEIFDEVLLVTNNP------- 323 Query: 54 EREEYRFLGLTQVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSA 113 E+Y FL +V D++PG G LAG+HA L + + + ACD+P+ +++ +R+ +++ Sbjct: 324 --EQYDFLPCRKVADIHPGMGALAGIHAGLHHAANPAAFMVACDMPYLNSDLIRH-LATL 380 Query: 114 AEPGRDLIRNYSGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECL 173 A+PG LI PES G ++PL +Y K L +E L R++ Sbjct: 381 ADPGGVLI--------------PESPAG-LEPLHAVYGKGCLAAIETTLLSGERRIVSFF 425 Query: 174 DALEVLYI-PEAGFTGGPEPSPLYNMNTPEDY 204 V + E P+ + N+NTP DY Sbjct: 426 GRTNVNRVNAEQVALFDPDYATFSNINTPVDY 457 >ref|ZP_00081809.1| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Geobacter metallireducens] Length = 394 Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 20/205 (9%) Query: 1 MPQFSGILLSGGYSRRMGRDKALLGLGGRPVIARLADELSKVAAGPVIACGEQEREEYRF 60 + +G++L GG SRRMGRDKAL+ LGG+P++ R+ D + ++ ER + Sbjct: 29 LSDVAGVILVGGRSRRMGRDKALIPLGGKPLVERVIDAFRPLFERILLVGDRGER--FAS 86 Query: 61 LGLTQVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDL 120 GL PD++PG L GL+ L+++ T V+ACD+P+ P + Sbjct: 87 YGLPVFPDIHPGSA-LGGLYTGLVRAGTPHVFVSACDVPW---------------PDPRV 130 Query: 121 IRNYSGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECLDALEVLY 180 I D VP ++ G +PL +Y LP +E L +R+ + + Y Sbjct: 131 IARLCSLREGFDVVVPRTVGGS-EPLFAVYGTGCLPAMERMLREGNYRIYDFYPEVRTRY 189 Query: 181 IPEAGFTGGPEPSPLY-NMNTPEDY 204 + +A P+ + N+NTPE++ Sbjct: 190 VEQAELADLVTPARTFVNVNTPEEF 214 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 345,880,582 Number of extensions: 14042448 Number of successful extensions: 30817 Number of sequences better than 1.0e-05: 116 Number of HSP's gapped: 30747 Number of HSP's successfully gapped: 116 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)