BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0010.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833111.1| 6-phosphogluconate dehydrogenase [Bacillus cere... 406 e-112 ref|NP_979710.1| 6-phosphogluconate dehydrogenase family protein... 405 e-112 ref|NP_657289.1| 6PGD, 6-phosphogluconate dehydrogenase [Bacillu... 405 e-112 ref|NP_243540.1| 6-phosphogluconate dehydrogenase [Bacillus halo... 396 e-109 ref|NP_978615.1| 6-phosphogluconate dehydrogenase [Bacillus cere... 387 e-106 >ref|NP_833111.1| 6-phosphogluconate dehydrogenase [Bacillus cereus ATCC 14579] gb|AAP10312.1| 6-phosphogluconate dehydrogenase [Bacillus cereus ATCC 14579] Length = 297 Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/291 (65%), Positives = 237/291 (81%), Gaps = 1/291 (0%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 +IGLGKMG NL NL++H H++V D+N ++ E GA SSL ++V L+ PRILW Sbjct: 5 LIGLGKMGLNLGKNLMDHKHEVVAFDLNTSAVEEMKEYGATGTSSLSELVQSLQSPRILW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 VMVP +V VID + LL GDI+I+ GNSHYKESI R +L+E GI+ DAGTSGG Sbjct: 65 VMVPHA-VVDSVIDEVTPLLSKGDILIEAGNSHYKESIRRYEQLKEDGIHFMDAGTSGGM 123 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 EGA +GAC+M+GGD E + ++EP+FRD AVE G+LY+G++GSGHFLKMVHNGIEYGMM + Sbjct: 124 EGARNGACYMIGGDQEAWDIVEPIFRDTAVENGFLYAGKAGSGHFLKMVHNGIEYGMMAA 183 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 I EGFE+LEKS FDY+YE V+++W+NGSVIR WLMEL +NAF+KD KL I+GVMHSSGE Sbjct: 184 IGEGFEILEKSEFDYDYEKVSRVWNNGSVIRSWLMELTENAFSKDAKLDEIKGVMHSSGE 243 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAV 291 GKWTV+TALDL+T+TPVIA+SLLMRYRSL++DTF GKVVAALRNEFGGHAV Sbjct: 244 GKWTVETALDLQTATPVIAMSLLMRYRSLDNDTFTGKVVAALRNEFGGHAV 294 >ref|NP_979710.1| 6-phosphogluconate dehydrogenase family protein [Bacillus cereus ATCC 10987] gb|AAS42318.1| 6-phosphogluconate dehydrogenase family protein [Bacillus cereus ATCC 10987] Length = 297 Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/291 (65%), Positives = 237/291 (81%), Gaps = 1/291 (0%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 +IGLGKMG NL NL++H H++V D+N ++ E GA SSL ++V L+ PR+LW Sbjct: 5 LIGLGKMGLNLGKNLMDHKHEVVAFDLNASAVEEMKEYGATGTSSLNELVQSLQSPRVLW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 VMVP +V VID + LL GDI+I+ GNSHYKESI R +L++ GI+ DAGTSGG Sbjct: 65 VMVPHA-VVDSVIDEVTPLLSKGDILIEAGNSHYKESIRRYEQLKKDGIHFMDAGTSGGM 123 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 EGA +GAC+M+GGD E + ++EP+FRD AVE GYLY+G++GSGHFLKMVHNGIEYGMM + Sbjct: 124 EGARNGACYMIGGDQEAWDIVEPIFRDTAVENGYLYAGKAGSGHFLKMVHNGIEYGMMAA 183 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 I EGFE+LEKS FDY+YE V+++W+NGSVIR WLMEL +NAF+KD KL I+GVMHSSGE Sbjct: 184 IGEGFEILEKSEFDYDYEKVSRVWNNGSVIRSWLMELTENAFSKDAKLDEIKGVMHSSGE 243 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAV 291 GKWTV+TALDL+T+TPVIA+SLLMRYRSL++DTF GKVVAALRNEFGGHAV Sbjct: 244 GKWTVETALDLQTATPVIAMSLLMRYRSLDNDTFTGKVVAALRNEFGGHAV 294 >ref|NP_657289.1| 6PGD, 6-phosphogluconate dehydrogenase [Bacillus anthracis A2012] ref|NP_845715.1| 6-phosphogluconate dehydrogenase family protein [Bacillus anthracis str. Ames] gb|AAP27201.1| 6-phosphogluconate dehydrogenase family protein [Bacillus anthracis str. Ames] Length = 297 Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/291 (65%), Positives = 237/291 (81%), Gaps = 1/291 (0%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 +IGLGKMG NL NL++H H++ D+N ++ E GA ASSL ++V L+ PR+LW Sbjct: 5 LIGLGKMGLNLGKNLIDHKHEVAAFDLNASAVEEMKEYGATGASSLNELVQSLQSPRVLW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 VMVP +V VID + LL GDI+I+ GNSHYKESI R +L++ GI+ DAGTSGG Sbjct: 65 VMVPHA-VVDSVIDEVTPLLSKGDILIEAGNSHYKESIRRYEQLKKDGIHFMDAGTSGGM 123 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 EGA +GAC+M+GGD E + ++EP+FRD AVE GYLY+G++GSGHFLKMVHNGIEYGMM + Sbjct: 124 EGARNGACYMIGGDQEAWDIVEPIFRDTAVENGYLYAGKAGSGHFLKMVHNGIEYGMMAA 183 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 I EGFE+LEKS FDY+YE V+++W+NGSVIR WLMEL +NAF+KD KL I+GVMHSSGE Sbjct: 184 IGEGFEILEKSEFDYDYEKVSRVWNNGSVIRSWLMELTENAFSKDAKLDEIKGVMHSSGE 243 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAV 291 GKWTV+TALDL+T+TPVIA+SLLMRYRSL++DTF GKVVAALRNEFGGHAV Sbjct: 244 GKWTVETALDLQTATPVIAMSLLMRYRSLDNDTFTGKVVAALRNEFGGHAV 294 >ref|NP_243540.1| 6-phosphogluconate dehydrogenase [Bacillus halodurans] pir||B83984 6-phosphogluconate dehydrogenase BH2674 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06393.1| 6-phosphogluconate dehydrogenase [Bacillus halodurans] Length = 298 Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust. Identities = 185/293 (63%), Positives = 233/293 (79%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 +IGLG+MGYNL LN+L+H H LV D+N + ++ GA A SLE++V+KL PR +W Sbjct: 5 LIGLGRMGYNLGLNILDHEHQLVAYDVNREAVKEIGLAGAKEADSLEELVSKLSAPRKIW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 VMVPAG+I V+ L+ LL+ GD++IDGGN++YK+++ R+ + +G++ DAGTSGG Sbjct: 65 VMVPAGDITENVVSQLSSLLDEGDVVIDGGNANYKDTLRRAKQYEAKGLHFVDAGTSGGI 124 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 +GA GAC MVGG EV + PL +++AVE GYLY+G GSGHFLKM+HNGIEYGMMQ+ Sbjct: 125 DGAREGACLMVGGTKEVVESLAPLLKEIAVEDGYLYTGPVGSGHFLKMIHNGIEYGMMQA 184 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 IAEGF+LLE S FDY+YE VA++W+NGSVIR WLMEL ++AF+KD L IRGVMHSSGE Sbjct: 185 IAEGFDLLENSPFDYDYEAVAKVWNNGSVIRSWLMELTESAFSKDANLEKIRGVMHSSGE 244 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAVVQ 293 GKWTV+TALDL+ PVIALSL+MRYRSL DDTF GKVVAALRNEFGGHAVV+ Sbjct: 245 GKWTVETALDLQIEAPVIALSLMMRYRSLRDDTFSGKVVAALRNEFGGHAVVK 297 >ref|NP_978615.1| 6-phosphogluconate dehydrogenase [Bacillus cereus ATCC 10987] gb|AAS41223.1| 6-phosphogluconate dehydrogenase [Bacillus cereus ATCC 10987] Length = 298 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 180/293 (61%), Positives = 235/293 (80%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 +IGLGKMG+ LA +L H++VV D+N + + G +L++M+ +LE PR +W Sbjct: 5 LIGLGKMGFPLAEHLYEDKHEVVVYDVNKELVEKAGALGITARHTLKEMIAELEAPRTIW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 VMVPAGE+V V+ + LLE GDI+I+GGNS YK+++ R+ + + G++ D GTSGG Sbjct: 65 VMVPAGEVVESVLKDVYPLLEEGDIVIEGGNSFYKDTLRRAEEAKSFGLHYVDIGTSGGV 124 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 EGA +GAC MVGG+ E++ +EPLF+DLAVE GY Y+G GSGHFLKMVHNGIEYGMMQ+ Sbjct: 125 EGARYGACLMVGGEKEIYDQLEPLFKDLAVENGYSYAGRVGSGHFLKMVHNGIEYGMMQA 184 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 IAEGFE+L+KS FD+NYE+VA++W+NGSVIRGWLM+L + AFA+DPKL GI+GVM+SSGE Sbjct: 185 IAEGFEVLDKSDFDFNYEDVAKVWANGSVIRGWLMDLTEKAFAEDPKLDGIKGVMNSSGE 244 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAVVQ 293 GKWTV+TAL+L+ + PVIA+SL MRYRS EDDTFHGKVV+ALRN+FGGH VV+ Sbjct: 245 GKWTVETALELQAAAPVIAMSLFMRYRSQEDDTFHGKVVSALRNQFGGHEVVK 297 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 457,736,788 Number of extensions: 19182498 Number of successful extensions: 56244 Number of sequences better than 1.0e-05: 1033 Number of HSP's gapped: 54856 Number of HSP's successfully gapped: 1037 Length of query: 296 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 171 Effective length of database: 417,850,203 Effective search space: 71452384713 Effective search space used: 71452384713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)