BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0001.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242006.1| sugar ABC transportor (ATP-binding protein) [Ba... 311 6e-84 emb|CAE45698.1| ATP-binding MalK protein [Alicyclobacillus acido... 311 6e-84 gb|AAC62409.1| maltose transportor ATP-binding protein [Bacillus... 305 6e-82 ref|NP_563261.1| probable maltose ABC transportor [Clostridium p... 302 4e-81 dbj|BAA95937.1| Orf5 [Clostridium perfringens] 297 1e-79 >ref|NP_242006.1| sugar ABC transportor (ATP-binding protein) [Bacillus halodurans] pir||D83792 sugar ABC transportor (ATP-binding protein) BH1140 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04859.1| sugar ABC transportor (ATP-binding protein) [Bacillus halodurans] Length = 365 Score = 311 bits (798), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 154/243 (63%), Positives = 188/243 (77%), Gaps = 5/243 (2%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 +LDRKPKA+SGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLR QMRAEITKL +RL+T Sbjct: 127 MLDRKPKAMSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRVQMRAEITKLHQRLQT 186 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQTEAMTM RIV+M DG+IQQ SP+E+Y+ P N+FV GFIGSP+MNF+NG Sbjct: 187 TTIYVTHDQTEAMTMATRIVIMKDGVIQQVGSPKEVYDFPENVFVGGFIGSPSMNFLNGR 246 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 L + + N+ +EVP GK +LR GY GKE+I+G+RPEDIH+E +F+E+SP + Sbjct: 247 LE----GSQLKIGNVSIEVPEGKLAVLREHGYEGKELILGIRPEDIHDELLFIESSPGSK 302 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 T+ ++V E G E +LY S L +IARVD RS + G K +LA+DMNK H FD ESE Sbjct: 303 ITAHIEVAELTGAETVLY-SQLSDQEIIARVDSRSDIQSGDKVELALDMNKCHFFDPESE 361 Query: 241 LNV 243 L + Sbjct: 362 LRI 364 >emb|CAE45698.1| ATP-binding MalK protein [Alicyclobacillus acidocaldarius] Length = 384 Score = 311 bits (798), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 152/243 (62%), Positives = 191/243 (78%), Gaps = 1/243 (0%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LLDRKPKALSGGQRQRVALGRAIVR+PQVFLMDEPLSNLDAKLR QMRAEI KL +RL+T Sbjct: 128 LLDRKPKALSGGQRQRVALGRAIVREPQVFLMDEPLSNLDAKLRVQMRAEIRKLHQRLQT 187 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQTEAMTMGDRIVVM DG+IQQA +P+ +Y++P N+FVAGFIGSP MNFI G Sbjct: 188 TVIYVTHDQTEAMTMGDRIVVMRDGVIQQADTPQVVYSQPKNMFVAGFIGSPAMNFIRGE 247 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 + G A FRA ++ + +P G+ +L+ G IGK V++GVRPED+H+E VF+ P+++ Sbjct: 248 IVQDGDAFYFRAPSISLRLPEGRYGVLKASGAIGKPVVLGVRPEDLHDEEVFMTTYPDSV 307 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 V+V E++G E+ L+ S +G T++ARV+ R GS KLAID+NKIHIFD E+E Sbjct: 308 LQMQVEVVEHMGSEVYLHTS-IGPNTIVARVNPRHVYHVGSSVKLAIDLNKIHIFDAETE 366 Query: 241 LNV 243 ++ Sbjct: 367 ESI 369 >gb|AAC62409.1| maltose transportor ATP-binding protein [Bacillus firmus] Length = 366 Score = 305 bits (781), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 148/243 (60%), Positives = 184/243 (75%), Gaps = 5/243 (2%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 +LDRKPKA+SGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLR QMRAEITKL KRL+T Sbjct: 127 MLDRKPKAMSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRVQMRAEITKLHKRLQT 186 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQTEAMTM RIV+M DG IQQ +P+++Y+ P N+FV GFIGSP+MNFI G Sbjct: 187 TTIYVTHDQTEAMTMATRIVIMKDGFIQQVGTPKDVYDNPENVFVGGFIGSPSMNFITGK 246 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 + F+ ++ V+VP GK ++LR+KGY+ KE+I+G+RPEDIH+E +F+E+SP T Sbjct: 247 IE----GDYFKVGDVTVKVPAGKLSVLRDKGYMNKEIILGIRPEDIHDELLFIESSPETK 302 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 T+ +DV E G E +LY S + +AR+D R+ G LA DMNK H FD E+E Sbjct: 303 LTAEIDVAELTGAETVLY-SSVNGQAFVARIDSRTDIEGGQSLDLAFDMNKSHFFDAETE 361 Query: 241 LNV 243 L + Sbjct: 362 LRI 364 >ref|NP_563261.1| probable maltose ABC transportor [Clostridium perfringens] dbj|BAB82051.1| probable maltose ABC transportor [Clostridium perfringens str. 13] Length = 369 Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 149/244 (61%), Positives = 186/244 (76%), Gaps = 1/244 (0%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LLDRKPKALSGGQRQRVALGRAIVR+P+VFLMDEPLSNLDAKLR QMR EI+KL +RL+T Sbjct: 127 LLDRKPKALSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRTEISKLHQRLQT 186 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQ EAMTMG RIVVM DGI+QQ SP+E+YN P N+FVAGFIGSP MNFI+GT Sbjct: 187 TFIYVTHDQVEAMTMGTRIVVMKDGIVQQVDSPQEIYNNPANIFVAGFIGSPQMNFIDGT 246 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 + + GG ++ +E+P KA LL+ KGYIGK VI+GVRPE + ++ + A+P T+ Sbjct: 247 IKEEGGKYFACFQSEKIEMPMDKARLLKEKGYIGKNVIIGVRPEHLDDDQELVAANPTTV 306 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 S V+VTE +G E +Y + LG + RV+G + + G + K +D NKIHIFDKE+E Sbjct: 307 IKSKVEVTELMGAESYIY-TKLGDQNITVRVNGSTKLQNGQEAKFYVDANKIHIFDKETE 365 Query: 241 LNVL 244 L ++ Sbjct: 366 LKLV 369 >dbj|BAA95937.1| Orf5 [Clostridium perfringens] Length = 369 Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 148/244 (60%), Positives = 183/244 (75%), Gaps = 1/244 (0%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LLDRKPKALSGGQRQRVALGRAIVR+P+VFLMDEPLSNLDAKLR QMR EI+KL +RL+T Sbjct: 127 LLDRKPKALSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRTEISKLHQRLQT 186 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQ EAMTMG RIVVM DGI+QQ SP+E+YN P N+FVAGFIGSP MNFI+GT Sbjct: 187 TFIYVTHDQVEAMTMGTRIVVMKDGIVQQVDSPQEIYNNPANIFVAGFIGSPQMNFIDGT 246 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 + + GG ++ +E+P KA LL+ KGYIGK VI+GVRPE + ++ E T+ Sbjct: 247 IKEEGGKYFACFQSEKIEMPMDKARLLKEKGYIGKNVIIGVRPEHLDDDQELGEGKSTTV 306 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 S V+VTE +G E +Y + LG + RV+G + + G + K +D NKIHIFDKE+E Sbjct: 307 IKSKVEVTELMGAESYIY-TKLGDQNITVRVNGSTKLQNGQEAKFYVDANKIHIFDKETE 365 Query: 241 LNVL 244 L ++ Sbjct: 366 LKLV 369 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 353,399,790 Number of extensions: 14421367 Number of successful extensions: 66681 Number of sequences better than 1.0e-05: 11550 Number of HSP's gapped: 66152 Number of HSP's successfully gapped: 11979 Length of query: 246 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 124 Effective length of database: 425,995,500 Effective search space: 52823442000 Effective search space used: 52823442000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)