BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0142.p
         (74 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein               60   8e-10
BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein               60   8e-10
BS_tlpC [NT] COG0840 Methyl-accepting chemotaxis protein               60   8e-10

>BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein
          Length = 83

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 52/67 (77%), Gaps = 4/67 (5%)

Query: 4  PDNRADNVEHLQQSIQHTMQNLHEAEDYLNEFSSEISSKEREQIEAKNERRKESIKGFRE 63
          PD+R+DNVE LQ  +Q+T++N+ EAE  + EF+   S +++++I+ KN RR++SI+ FR 
Sbjct: 13 PDDRSDNVEKLQDMVQNTIENIEEAEASM-EFA---SGEDKQRIKEKNARREQSIEAFRN 68

Query: 64 EVKDEAA 70
          E++DE+A
Sbjct: 69 EIQDESA 75


>BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein
          Length = 83

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 52/67 (77%), Gaps = 4/67 (5%)

Query: 4  PDNRADNVEHLQQSIQHTMQNLHEAEDYLNEFSSEISSKEREQIEAKNERRKESIKGFRE 63
          PD+R+DNVE LQ  +Q+T++N+ EAE  + EF+   S +++++I+ KN RR++SI+ FR 
Sbjct: 13 PDDRSDNVEKLQDMVQNTIENIEEAEASM-EFA---SGEDKQRIKEKNARREQSIEAFRN 68

Query: 64 EVKDEAA 70
          E++DE+A
Sbjct: 69 EIQDESA 75


>BS_tlpC [NT] COG0840 Methyl-accepting chemotaxis protein
          Length = 83

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 52/67 (77%), Gaps = 4/67 (5%)

Query: 4  PDNRADNVEHLQQSIQHTMQNLHEAEDYLNEFSSEISSKEREQIEAKNERRKESIKGFRE 63
          PD+R+DNVE LQ  +Q+T++N+ EAE  + EF+   S +++++I+ KN RR++SI+ FR 
Sbjct: 13 PDDRSDNVEKLQDMVQNTIENIEEAEASM-EFA---SGEDKQRIKEKNARREQSIEAFRN 68

Query: 64 EVKDEAA 70
          E++DE+A
Sbjct: 69 EIQDESA 75


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.304    0.120    0.311 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,795,476
Number of extensions: 155419
Number of successful extensions: 917
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 3
Length of query: 74
Length of database: 38,378,431
Length adjustment: 45
Effective length of query: 29
Effective length of database: 33,188,401
Effective search space: 962463629
Effective search space used: 962463629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 109 (46.6 bits)