BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0127.p
         (93 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ptsH [G] COG1925 Phosphotransferase system, HPr-related proteins   103   4e-23
BH3074 [G] COG1925 Phosphotransferase system, HPr-related proteins     92   1e-19
CAC1820 [G] COG1925 Phosphotransferase system, HPr-related proteins    63   1e-10
BH3566 [G] COG1925 Phosphotransferase system, HPr-related proteins     58   4e-09
RSc0347 [G] COG1925 Phosphotransferase system, HPr-related proteins    56   1e-08

>BS_ptsH [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 85

 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 0/88 (0%), Positives = 0/88 (0%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGVPXXXX 60
          M ++  T+T   G+HTRPA+  V+ A  + +E+ +  NG++ + KS+  + +LG+     
Sbjct: 1  MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTV 60

Query: 61 XXXXXXXSDADKAIEGIEEALKKEGLGE 88
                                      
Sbjct: 61                              88


>BH3074 [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 87

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGVPXXXX 60
          M +KTFT+T E GIH RPA+ LV  A +Y++E+ +EY G+ VNLKSI+GVMSLGV     
Sbjct: 1  MAEKTFTITAETGIHARPATQLVNKAGQYSSEITLEYKGKAVNLKSIMGVMSLGVGKGAQ 60

Query: 61 XXXXXXXSDADKAIEGIEEALKKEGLGE 88
                 SD  +A++GIEE + KEGLGE
Sbjct: 61 VTIKAEGSDEAEALKGIEEVI-KEGLGE 87


>CAC1820 [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 86

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 40/55 (72%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGV 55
          MV K+  V    G+H RPA++LV+ AS + ++V +E+NG+  N KS++GV+SLGV
Sbjct: 1  MVTKSVVVKSSTGLHARPATLLVKKASGFKSDVTMEFNGKKANAKSLIGVLSLGV 55


>BH3566 [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 84

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGVPXXXX 60
          MV+K   V  + G+  RPA++ VQ A+++ +E+ IE +G+ VN KSI+G+MSL +     
Sbjct: 1  MVEKQVEVKLKTGLQARPAALFVQEANRFTSEIFIEKDGKKVNAKSIMGLMSLAIGSGST 60

Query: 61 XXXXXXXSDADKAIEGIEEALKKE 84
                 +D  +A+E +   ++KE
Sbjct: 61 ITLITEGNDEQEAMEALIAFIEKE 84


>RSc0347 [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 89

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGVPXXXX 60
          M+++  T+ ++LG+H R ++ L Q ASK+++++ +  NGR V+ KSI+GVM L       
Sbjct: 1  MLQRDITIINKLGLHARASAKLTQLASKFDSQIKMSRNGRQVDAKSIMGVMMLAAGIGST 60

Query: 61 XXXXXXXSDADKAIEGI 77
                  D   A++G+
Sbjct: 61 VTLEIEGPDEQAAMDGL 77


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.310    0.130    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,551,422
Number of extensions: 153774
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 26
Length of query: 93
Length of database: 38,378,431
Length adjustment: 62
Effective length of query: 31
Effective length of database: 31,227,723
Effective search space: 968059413
Effective search space used: 968059413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 109 (46.6 bits)