BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0124.p
         (115 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy2052 [G] COG1447 Phosphotransferase system cellobiose-specifi...    76   1e-14
lin1830 [G] COG1447 Phosphotransferase system cellobiose-specifi...    72   2e-13
lin0917 [G] COG1447 Phosphotransferase system cellobiose-specifi...    69   1e-12
SP0248 [G] COG1447 Phosphotransferase system cellobiose-specific...    69   2e-12
CAC2965 [G] COG1447 Phosphotransferase system cellobiose-specifi...    66   1e-11

>SPy2052 [G] COG1447 Phosphotransferase system cellobiose-specific
          component IIA
          Length = 106

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 61/89 (68%)

Query: 11 MQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNCIQKETEGAKG 70
          M +IL+AG+A++H   ALK  ++ D+A ++++M LA+  ++ AH +QT  + +E  G K 
Sbjct: 11 MGLILNAGDAKQHIYQALKCAKEDDYATSEKEMALADDALLEAHNLQTQFLAQEASGNKS 70

Query: 71 EYSVLFAHAQDTLMTIYSEINIAKRLIDI 99
          E + LF H+QD LMT  +EIN+ K +ID+
Sbjct: 71 EITALFVHSQDHLMTTITEINLIKEIIDL 99


>lin1830 [G] COG1447 Phosphotransferase system cellobiose-specific component
           IIA
          Length = 301

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 8/98 (8%), Positives = 20/98 (20%)

Query: 5   EVAQDAMQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNCIQKE 64
            + +     I   G      +  L  +     +    K +     IV  H          
Sbjct: 2   SIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV 61

Query: 65  TEGAKGEYSVLFAHAQDTLMTIYSEINIAKRLIDIFES 102
                        +         S  ++   +  +  +
Sbjct: 62  DTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGT 99


>lin0917 [G] COG1447 Phosphotransferase system cellobiose-specific component
           IIA
          Length = 116

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 59/96 (61%)

Query: 10  AMQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNCIQKETEGAK 69
           +M I++HAG AR      L  +E+ +F  A+E +  A  EIVIAH +QT+ +Q E  G +
Sbjct: 17  SMNILIHAGNARNDLVKGLNHLEELEFNEAEELIASAKKEIVIAHSLQTDTLQLEASGNQ 76

Query: 70  GEYSVLFAHAQDTLMTIYSEINIAKRLIDIFESFNQ 105
             YS LF HAQDTLMT  SEI I + ++ +F+   +
Sbjct: 77  IRYSTLFCHAQDTLMTAKSEILIGEHMLRLFKKMTE 112


>SP0248 [G] COG1447 Phosphotransferase system cellobiose-specific component
           IIA
          Length = 106

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 62/99 (62%)

Query: 8   QDAMQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNCIQKETEG 67
           Q  M +IL+AG+A++H   AL  I+       +E+++LA+A ++ AH +QT  + +E  G
Sbjct: 8   QIIMGLILYAGDAKQHIYKALDYIKNGTCERCEEEIQLADAALLEAHNLQTKFLAQEASG 67

Query: 68  AKGEYSVLFAHAQDTLMTIYSEINIAKRLIDIFESFNQR 106
            K E + LF H+QD LMT  +EIN+ K +I + +  +++
Sbjct: 68  TKTEITALFVHSQDHLMTSMTEINLIKEIISLRKELHKK 106


>CAC2965 [G] COG1447 Phosphotransferase system cellobiose-specific component
           IIA
          Length = 104

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 56/104 (53%)

Query: 1   MTSEEVAQDAMQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNC 60
           M  EE+    M+I+ +AG+AR    +AL      D+  A++ +   N  I  AH VQT  
Sbjct: 1   MNKEELELTTMEIVAYAGDARSKYLEALNAANGGDYDKAQQLVLEGNDLITEAHNVQTKM 60

Query: 61  IQKETEGAKGEYSVLFAHAQDTLMTIYSEINIAKRLIDIFESFN 104
           IQ E +G K E   L  HAQD LMT+    ++ K LI++++  N
Sbjct: 61  IQMEAQGKKIEVGFLVVHAQDHLMTVMLLRDLVKNLINLYKKVN 104


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,023,714
Number of extensions: 234184
Number of successful extensions: 457
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 21
Length of query: 115
Length of database: 38,378,431
Length adjustment: 82
Effective length of query: 33
Effective length of database: 28,921,043
Effective search space: 954394419
Effective search space used: 954394419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)