BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0120.p
         (122 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HI0186 [K] COG0789 Predicted transcriptional regulators                86   1e-17
CAC3507 [K] COG0789 Predicted transcriptional regulators               83   1e-16
lin1622 [K] COG0789 Predicted transcriptional regulators               79   1e-15
lin0818 [K] COG0789 Predicted transcriptional regulators               78   3e-15
CAC0766 [K] COG0789 Predicted transcriptional regulators               71   4e-13

>HI0186 [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 73/116 (62%)

Query: 5   FTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSV 64
           +T  + A K+G++   +RFY+++GLL  V R+E  NR +TD ++ WL  L+CL+ TGMS+
Sbjct: 3   YTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSL 62

Query: 65  EEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERYYRGE 120
           ++IK++ +    G  T+ ER+ L ++Q + +   I + K  L  LE+KL  Y + +
Sbjct: 63  KDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQKAK 118


>CAC3507 [K] COG0789 Predicted transcriptional regulators
          Length = 126

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 72/113 (63%)

Query: 5   FTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSV 64
           F+I +VA   GL+   +RFYE++ L+  + R+E   R+Y+D +I W+ FL  ++ TGM +
Sbjct: 5   FSIKEVAKLTGLSEHTLRFYEKQQLIKNISRDENGYRIYSDFDIEWIHFLIKVKNTGMPL 64

Query: 65  EEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERYY 117
            E++KY +++  G  TLPER K++   ++ + ++I   +  L  ++ KL+RY+
Sbjct: 65  NELQKYSELMAQGNPTLPEREKMLLQHRKRVENEISDLEITLTKIDEKLDRYH 117


>lin1622 [K] COG0789 Predicted transcriptional regulators
          Length = 145

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 63/108 (58%)

Query: 9   QVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSVEEIK 68
           +VA K+G+ +  + +YE+ GLL  + RN   NR+YT++ I WL  +  +RE G+ + EI+
Sbjct: 7   EVAEKLGITVPTLHYYEKAGLLPSIKRNSVGNRIYTEENIEWLYMIVLMREVGVPIREIR 66

Query: 69  KYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERY 116
            Y  ++  G  T+PER +L+   KQ++ + +   +  L  L  K+  Y
Sbjct: 67  SYIQLLLKGPETIPERYQLVTQYKQSVEEKMKAMQTSLKWLGAKVNFY 114


>lin0818 [K] COG0789 Predicted transcriptional regulators
          Length = 129

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 6   TIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSVE 65
           TI + +   GL+   IR+YER+GL+  + R++ NNR++ +D ++WL  L CLR TGM + 
Sbjct: 4   TIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPLA 63

Query: 66  EIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLER 115
           + K+  ++ K G  T+ ERI ++++ +Q    D+ +++A+L     K+E+
Sbjct: 64  KQKEIVELTKCGDETVSERIAVLKEHQQ----DMYRRQAELDRAFKKIEK 109


>CAC0766 [K] COG0789 Predicted transcriptional regulators
          Length = 126

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 64/112 (57%)

Query: 5   FTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSV 64
            TI +V+ K  ++   +R+YER  L+  V RN    R YT ++  W+ F++C+R  G+S+
Sbjct: 1   MTIKEVSQKYDISADTLRYYERIKLIPAVNRNSSGIRDYTHEDCKWVQFIKCMRSAGLSI 60

Query: 65  EEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERY 116
           E + +Y  M + G ST+  R +L+ +Q+  L+  I   +  L  L+ K++ Y
Sbjct: 61  EVLIEYVKMFQEGNSTIGTRKQLLIEQRSQLVKKIKVMQQTLERLDKKIDGY 112


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.140    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,162,176
Number of extensions: 342460
Number of successful extensions: 977
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 55
Length of query: 122
Length of database: 38,378,431
Length adjustment: 88
Effective length of query: 34
Effective length of database: 28,229,039
Effective search space: 959787326
Effective search space used: 959787326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)