BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0116.p
         (91 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0694 [K] COG0640 Predicted transcriptional regulators               129   1e-30
CC1280 [K] COG0640 Predicted transcriptional regulators                65   2e-11
SMb20608 [K] COG0640 Predicted transcriptional regulators              64   4e-11
RSc0993 [K] COG0640 Predicted transcriptional regulators               60   9e-10
RSc1960 [K] COG0640 Predicted transcriptional regulators               58   4e-09

>BH0694 [K] COG0640 Predicted transcriptional regulators
          Length = 109

 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 76/91 (83%)

Query: 1   MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60
           +VE+L+DGPL VGEIA ++GLRQPQASKHLRVLLEAGLVEV+ +ANRR Y LR EP +AL
Sbjct: 17  IVELLRDGPLPVGEIANRVGLRQPQASKHLRVLLEAGLVEVKVEANRRIYTLRQEPFQAL 76

Query: 61  DAWLEAYRKMWNERFDNLDEYLRHLQSQGKE 91
             WLE Y  +WNERF++LD YL+ LQ++ ++
Sbjct: 77  HEWLETYNTIWNERFNSLDRYLQELQTKKQK 107


>CC1280 [K] COG0640 Predicted transcriptional regulators
          Length = 109

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 6/92 (6%)

Query: 2   VEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVE---VEAQANRRNYRLRTEPLE 58
           V++L++ P   GE+AE LGL  P  S+HLR L ++GLVE    E  A  R YRLR  P+ 
Sbjct: 21  VDLLRERPRRAGELAESLGLTAPAMSRHLRALRQSGLVEESHPEFDARVRVYRLRPGPMA 80

Query: 59  ALDAWLEAYRKMWNERFDNLDEYLRHLQSQGK 90
            L AWLEA  + W    D L     H++S+ +
Sbjct: 81  ELKAWLEAAEEHW---VDQLSALKAHVESKAR 109


>SMb20608 [K] COG0640 Predicted transcriptional regulators
          Length = 112

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 45/90 (50%)

Query: 1   MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60
           +V  L  G  +V E+A    +  P  SKHL+VL  AGL+     A  R  RL   PL+ +
Sbjct: 19  IVARLAAGEATVNELAAPFEMSLPAVSKHLKVLERAGLISRGRNAQWRPCRLEAAPLKEI 78

Query: 61  DAWLEAYRKMWNERFDNLDEYLRHLQSQGK 90
             W+E YR  W   FD LD YL  LQ   K
Sbjct: 79  ADWVERYRHFWEGSFDRLDSYLHELQRNEK 108


>RSc0993 [K] COG0640 Predicted transcriptional regulators
          Length = 121

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 45/91 (49%)

Query: 1   MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60
           ++  L  G   V E+A    +  P  SKHLRVL EAGL+E E  A  R   LR   L   
Sbjct: 23  ILARLSAGEAPVSELARPFDISAPAISKHLRVLAEAGLIEREVSARWRICHLRPGALREA 82

Query: 61  DAWLEAYRKMWNERFDNLDEYLRHLQSQGKE 91
             WLEAYR++W    D L  ++   ++   +
Sbjct: 83  HGWLEAYRQLWEGNLDRLVAFVEQTRTAPPD 113


>RSc1960 [K] COG0640 Predicted transcriptional regulators
          Length = 118

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 42/89 (47%)

Query: 1   MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60
           M+  L  GP SV E+A  LG+  P   +HL VL  +GLV  E     R  R+  + L   
Sbjct: 23  MLAQLTRGPASVSELARPLGMSLPAVMQHLAVLEHSGLVRSEKTGRVRTCRIEPQALSLA 82

Query: 61  DAWLEAYRKMWNERFDNLDEYLRHLQSQG 89
           + W+   R  W   FD L  YL  L  +G
Sbjct: 83  EQWINQRRIEWEHHFDRLGAYLATLGQEG 111


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,876,002
Number of extensions: 206587
Number of successful extensions: 1806
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 17
Length of query: 91
Length of database: 38,378,431
Length adjustment: 61
Effective length of query: 30
Effective length of database: 31,343,057
Effective search space: 940291710
Effective search space used: 940291710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)