BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0110.p (402 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF1728 [G] COG2814 Arabinose efflux permease 241 2e-63 PA2314 [G] COG2814 Arabinose efflux permease 239 5e-63 mll3374 [G] COG2814 Arabinose efflux permease 114 4e-25 ZyicM [G] COG2814 Arabinose efflux permease 108 1e-23 ECs4596 [G] COG2814 Arabinose efflux permease 108 1e-23 >XF1728 [G] COG2814 Arabinose efflux permease Length = 447 Score = 241 bits (615), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/383 (39%), Positives = 190/383 (49%), Gaps = 8/383 (2%) Query: 21 LPWGSLLALAMTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPLT 80 LP +LL LAMTGFI I+TET+PAGLL QI L + AGQ+VT+YA GSL AAIPL Sbjct: 65 LPTAALLMLAMTGFIAIVTETLPAGLLPQIAQDLAIPATAAGQMVTVYAAGSLLAAIPLV 124 Query: 81 AATRGWRRKPXXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARRM 140 + T+ RRKP FN VT FS + LTL ARF AGVSAG+ WG+ GYARRM Sbjct: 125 SLTQTRRRKPVLMLALAGFLFFNLVTAFSPWFALTLVARFLAGVSAGLSWGLLGGYARRM 184 Query: 141 VPEPLKGRAMAVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKLP 200 V + LKGRA+AVAMVGTPLAL+ GVP GT G + GWR F ++P Sbjct: 185 VVDRLKGRALAVAMVGTPLALSIGVPLGTFTGGIIGWRGAFVSLSVVAALLLVAMAWRMP 244 Query: 201 DYPGEDAGKRLPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAPYLTQTGFTGRMDLVL 260 D PG+ +R+ + V + GVR +LYTYIA + G + +DL+L Sbjct: 245 DVPGQPPERRISIGSVLGSAGVRSILFTALAWVTAQYMLYTYIAVFAGTLGRSADVDLLL 304 Query: 261 LIFGITALLGIWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAA----V 316 L FG+ A++GIWL GV +DRHLR +V P L A + Sbjct: 305 LAFGVAAIVGIWLAGVMVDRHLR----LHVIGSLVLFVAVTLVFTSPASAALFAVPAMML 360 Query: 317 WGLTFGXXXXXXXXXXXXXXRESADVAQSMLVTAWNLAXXXXXXXXXXLLETTGVRSFPW 376 WG +FG E D+ +ML T WN +L G P Sbjct: 361 WGASFGGAATSIQTAASDAAGEGVDIVGAMLTTVWNAGIAAGGALGALVLARGGASVLPA 420 Query: 377 VXXXXXXXXXXXXWRSRAHGFPA 399 R HGF A Sbjct: 421 SMLPLILVALATALACRRHGFKA 443 >PA2314 [G] COG2814 Arabinose efflux permease Length = 417 Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 214/378 (56%) Query: 20 RLPWGSLLALAMTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPL 79 RLP +LLA+AM+GF+ IL+ET+PAGLL QI GL V+EA+AGQLV++YALGSL AA+P Sbjct: 21 RLPLSALLAMAMSGFVAILSETLPAGLLPQIGAGLAVSEALAGQLVSVYALGSLLAALPA 80 Query: 80 TAATRGWRRKPXXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARR 139 + T+GWRR+ V N+ T SS+Y LTL ARF +GV+AG+ WG+ AGYARR Sbjct: 81 ASLTQGWRRRRVLLLALLIFFVCNSFTAVSSDYRLTLLARFGSGVAAGLAWGLLAGYARR 140 Query: 140 MVPEPLKGRAMAVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKL 199 +VP +GRA+AVAM+G PLAL+ GVP GT G L GWR FG+ + Sbjct: 141 LVPPEQQGRALAVAMLGAPLALSLGVPLGTWLGGLLGWRWAFGLLSLTALLLVGWVLRSV 200 Query: 200 PDYPGEDAGKRLPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAPYLTQTGFTGRMDLV 259 PD+PG+ AG+RL L V PGVRP HNILYTYIAP+L + G +DL Sbjct: 201 PDFPGQPAGRRLRLLGVLRTPGVRPVLLVIVAWVLAHNILYTYIAPFLAKVGLGASVDLA 260 Query: 260 LLIFGITALLGIWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAAVWGL 319 LL+FG A+ GIWL+GV +DRHLR + + + A+WGL Sbjct: 261 LLVFGSAAVAGIWLVGVLVDRHLRRMVLASLALFAVAALALCLGARWSWLAFAGLALWGL 320 Query: 320 TFGXXXXXXXXXXXXXXRESADVAQSMLVTAWNLAXXXXXXXXXXLLETTGVRSFPWVXX 379 TFG E AD+AQSM+V AWNLA +L+ G PW Sbjct: 321 TFGGAATLLQTASADAAGEGADLAQSMIVVAWNLAIAGGGALGGMVLQRWGSEMLPWTLL 380 Query: 380 XXXXXXXXXXWRSRAHGF 397 W + AH F Sbjct: 381 PLIGLAAVLVWGNAAHAF 398 >mll3374 [G] COG2814 Arabinose efflux permease Length = 1091 Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 24/353 (6%), Positives = 41/353 (11%), Gaps = 2/353 (0%) Query: 23 WGSLLALAMTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPLTAA 82 +L T + L H + + + + S A Sbjct: 27 TVTLYLPVSTFVGTGFFIHPQSKEKLMKRHLNTCYRLVWNHMTGAFVVASELARARGKRG 86 Query: 83 TRGWRRKPXXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARRMVP 142 V + TLA V + Sbjct: 87 GVAVALSLAAVTSLPVLAADIVVHPGETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPD 146 Query: 143 EPLKGRAMAVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKLPDY 202 V GT L Sbjct: 147 NEANTGGQWVQDGGTANKTTVTSGGLQRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNGG 206 Query: 203 PGEDAGKRLPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAPYLTQTGF--TGRMDLVL 260 + V G + N + Sbjct: 207 EQWMHEGAIATGTVINDKGWQVVKPGTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRT 266 Query: 261 LIFGITALLGIWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAAVWGLT 320 I + G G V Sbjct: 267 TINKNGRQIVRAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDG 326 Query: 321 FGXXXXXXXXXXXXXXRESADVAQSMLVTAWNLAXXXXXXXXXXLLETTGVRS 373 + ++ + TG+ Sbjct: 327 WQIVKNGGVAGNTTVNQKGRLQVDAGGTATNVTLKQGGALVTSTAATVTGINR 379 >ZyicM [G] COG2814 Arabinose efflux permease Length = 451 Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 18/305 (5%), Positives = 40/305 (13%), Gaps = 2/305 (0%) Query: 20 RLPWGSLLALAMTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPL 79 L + L + F + G V A I Sbjct: 32 TLNASHISMLKWSAFPLKHATGNTMSEFIAENRGADAITRPNWSAVFSVAFCVACLIIVE 91 Query: 80 TAATRGWRRKPXXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARR 139 + T +L + + Sbjct: 92 FLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT 151 Query: 140 MVPEPLKGRAMAVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKL 199 + + ++ L + R V Sbjct: 152 LSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIA 211 Query: 200 PDYPGEDAGKRLPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAP-YLTQTGF-TGRMD 257 L ++ P + Q F + Sbjct: 212 LVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRP 271 Query: 258 LVLLIFGITALLGIWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAAVW 317 V+ + + L + + Sbjct: 272 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFIL 331 Query: 318 GLTFG 322 + Sbjct: 332 KRSVK 336 >ECs4596 [G] COG2814 Arabinose efflux permease Length = 412 Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 2/305 (0%) Query: 20 RLPWGSLLALAMTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPL 79 R W ++ ++A I+ E +P LL + LG++E +AGQ VT+ A ++ A++ + Sbjct: 32 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFI 91 Query: 80 TAATRGWRRKPXXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARR 139 T + R+ + + +F+++++L L R G++ G W MSA R Sbjct: 92 TQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMR 151 Query: 140 MVPEPLKGRAMAVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKL 199 +VP +A++V +AL P G G+L GWR+VF L Sbjct: 152 LVPPRTVPKALSVIFGAVSIALVIAAPLGCFLGELIGWRNVFNAAAAMGVLCIFWIIKSL 211 Query: 200 PDYPGEDAGKRLPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAP-YLTQTGF-TGRMD 257 P PGE + ++ ++ PGV +TYI P Y+T GF + Sbjct: 212 PSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMTLAGFGVDGLT 271 Query: 258 LVLLIFGITALLGIWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAAVW 317 LVLL FGI + +G L + R ++ + + V VA +W Sbjct: 272 LVLLSFGIASFVGTSLSSFILKRSVKLALAGAPFVLALSALVLTLWGSDKIVATGVAIIW 331 Query: 318 GLTFG 322 GLTF Sbjct: 332 GLTFA 336 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,687,329 Number of extensions: 712573 Number of successful extensions: 2287 Number of sequences better than 1.0e-05: 55 Number of HSP's gapped: 2227 Number of HSP's successfully gapped: 55 Length of query: 402 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 293 Effective length of database: 25,807,025 Effective search space: 7561458325 Effective search space used: 7561458325 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 117 (49.7 bits)