BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0107.p (845 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1027GM [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra... 265 3e-70 all1175_4 [T] COG2200 FOG: EAL domain 235 2e-61 all4225_2 [T] COG2200 FOG: EAL domain 234 5e-61 PA0575_4 [T] COG2200 FOG: EAL domain 229 1e-59 PA0285_3 [T] COG2200 FOG: EAL domain 224 6e-58 >AGl1027GM [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 274 Score = 265 bits (676), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 0/416 (0%), Positives = 0/416 (0%), Gaps = 7/416 (1%) Query: 421 LAYSDELTGLANRRSFHNLLLEHTEHTGVPAYPFTLFFIDLDRFKRINDLFGHSFGDKVI 480 Sbjct: 220 279 Query: 481 QQAAGKLKRCLPSSCSIARMGGDEFTVLVPHLRSRAEMESLAASIVEEFAHPFEVGNHSV 540 Sbjct: 280 - 338 Query: 541 KLSASVGIARFPEDGLDADSLVKHADTAMYSAKENGSFQYQFYDAERD-QTSLERIILEN 599 Sbjct: 339 - 397 Query: 600 DLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRWQHPLLGMIPPLEFIPLAEKSGFIIP 659 Sbjct: 398 457 Query: 660 LEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHLMKPDIFQSIMSTIHELDFDTQLLEL 719 Sbjct: 458 ---- 513 Query: 720 EITESAMMHNEEHVISILNDLRRAGISVSMDDFGTGYSSLSYLQSLPIGCLKIDRSFVRK 779 Sbjct: 514 573 Query: 780 ITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQVALLKEIQCYNAQGFYYSKPV 835 Sbjct: 574 629 >all1175_4 [T] COG2200 FOG: EAL domain Length = 261 Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/251 (42%), Positives = 173/251 (68%) Query: 593 ERIILENDLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRWQHPLLGMIPPLEFIPLAE 652 E + LE L +L+ +++++YQP+++I +G+I G+EAL+RWQHP +G++ P FIP+AE Sbjct: 1 ELLTLEKSLRYALEKQELKVYYQPRVNILTGQITGMEALLRWQHPEMGIVAPSIFIPIAE 60 Query: 653 KSGFIIPLEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHLMKPDIFQSIMSTIHELDF 712 ++G IIP+ +WVLRTAC Q + W++ G V +AVN+S +P + + + + + E Sbjct: 61 ETGLIIPIGEWVLRTACMQNRAWQEAGLPPVQMAVNLSPKQFRQPTLLELVSAILAETGL 120 Query: 713 DTQLLELEITESAMMHNEEHVISILNDLRRAGISVSMDDFGTGYSSLSYLQSLPIGCLKI 772 + LELEITES + + + S+L +L++ G+ +++DDFGTG+SSLS LQ LP+ LKI Sbjct: 121 APEFLELEITESTAIEDIDFTRSVLENLQQMGVDIAIDDFGTGHSSLSRLQLLPLHNLKI 180 Query: 773 DRSFVRKITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQVALLKEIQCYNAQGFYYS 832 D SF++ +TTD+ I + I+++ + LGL + AEGVE +E++ LK I C + QGF + Sbjct: 181 DGSFIKALTTDSKVAHIVKAIVTLGRSLGLRLTAEGVEKQEELDFLKSINCQDVQGFLFH 240 Query: 833 KPVSADEITSI 843 KP+SA++ T I Sbjct: 241 KPLSAEKATEI 251 >all4225_2 [T] COG2200 FOG: EAL domain Length = 260 Score = 234 bits (596), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 108/251 (43%), Positives = 170/251 (67%) Query: 593 ERIILENDLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRWQHPLLGMIPPLEFIPLAE 652 ER+ LEN+L +L+ ++I ++YQP ID+++ +I +EALVRWQHP G++ P +FIP+AE Sbjct: 1 ERLALENELHGALERNEIVVYYQPIIDLQTKQITAVEALVRWQHPTRGLVSPAKFIPIAE 60 Query: 653 KSGFIIPLEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHLMKPDIFQSIMSTIHELDF 712 +G I+ + +WVLRTAC Q +TW+ G + ++VN+S + ++ + + I E Sbjct: 61 ANGLIVEIGEWVLRTACLQNRTWQLAGLPPIRMSVNLSARQFEESNLVELVSEIIQESGL 120 Query: 713 DTQLLELEITESAMMHNEEHVISILNDLRRAGISVSMDDFGTGYSSLSYLQSLPIGCLKI 772 LELE+TES++M + + ++IL LR G+ +++DDFGTGYSSL+YL+ P+ LKI Sbjct: 121 HPSYLELEVTESSLMTDIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPVNMLKI 180 Query: 773 DRSFVRKITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQVALLKEIQCYNAQGFYYS 832 DRSFV+ + ++ DS A+ II++AK L L I AEG+ET++Q++ L++ C QG+Y+ Sbjct: 181 DRSFVQDVCSNPDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQGYYFG 240 Query: 833 KPVSADEITSI 843 P A EI I Sbjct: 241 IPAPAKEIMEI 251 >PA0575_4 [T] COG2200 FOG: EAL domain Length = 267 Score = 229 bits (584), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 110/253 (43%), Positives = 164/253 (64%) Query: 593 ERIILENDLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRWQHPLLGMIPPLEFIPLAE 652 ER+ LE +L ++L+ D+++L+YQPK+ + SG +VG EALVRW HPL G I P FIPLAE Sbjct: 1 ERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISPERFIPLAE 60 Query: 653 KSGFIIPLEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHLMKPDIFQSIMSTIHELDF 712 G I+PL WVL AC Q+ W++ P++VN++ L +P + + + + + Sbjct: 61 DCGLILPLGDWVLEHACQQMGEWQKLHAPFGPLSVNLAGAQLGQPQLIERLEQLLEQSGL 120 Query: 713 DTQLLELEITESAMMHNEEHVISILNDLRRAGISVSMDDFGTGYSSLSYLQSLPIGCLKI 772 + L+LEITES +M+ E +++L+ L+R G+ +++DDFGTGYSSLSYL+ LP+ LKI Sbjct: 121 EPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLKRLPLDILKI 180 Query: 773 DRSFVRKITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQVALLKEIQCYNAQGFYYS 832 D+SF+R + D AI II++ + + LT++AEGVETE Q + L C QGF S Sbjct: 181 DKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGCEQIQGFVLS 240 Query: 833 KPVSADEITSIYL 845 P+ A+ S +L Sbjct: 241 PPLPAELFASKFL 253 >PA0285_3 [T] COG2200 FOG: EAL domain Length = 274 Score = 224 bits (570), Expect = 6e-58, Method: Composition-based stats. Identities = 108/261 (41%), Positives = 170/261 (65%) Query: 580 YQFYDAERDQTSLERIILENDLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRWQHPLL 639 Y FY + + +E+ L +L++D++R+ YQP D+ SG IVG+E+LVRWQHP Sbjct: 2 YAFYTRVLTARARAHVQVESALRHALEHDELRVHYQPVHDLASGRIVGVESLVRWQHPER 61 Query: 640 GMIPPLEFIPLAEKSGFIIPLEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHLMKPDI 699 G++PP EF+P+AE+ G I L+ WVL+ AC Q++ W+Q G ++ VAVNVS + + Sbjct: 62 GLVPPGEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELEFVAVNVSSRLFNRGGL 121 Query: 700 FQSIMSTIHELDFDTQLLELEITESAMMHNEEHVISILNDLRRAGISVSMDDFGTGYSSL 759 + I + + E + + LELE+TESA+M + E +++L LR G+++++DDFGTGYSSL Sbjct: 122 EERIANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSL 181 Query: 760 SYLQSLPIGCLKIDRSFVRKITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQVALLK 819 L+ LP+ LKID+ FV + D AIA I+++A+ +GL +VAEG+E ++Q L+ Sbjct: 182 MRLKRLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLR 241 Query: 820 EIQCYNAQGFYYSKPVSADEI 840 E C QG++Y +P A+ + Sbjct: 242 EHGCDFGQGYWYGRPQPAEAL 262 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 56,950,621 Number of extensions: 2310906 Number of successful extensions: 5722 Number of sequences better than 1.0e-05: 265 Number of HSP's gapped: 5457 Number of HSP's successfully gapped: 266 Length of query: 845 Length of database: 38,378,431 Length adjustment: 115 Effective length of query: 730 Effective length of database: 25,115,021 Effective search space: 18333965330 Effective search space used: 18333965330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 120 (50.8 bits)