BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0101.p (182 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0592 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 125 4e-29 SP0710 [E] COG0765 ABC-type amino acid transport system, permeas... 124 9e-29 mlr2204 [E] COG0765 ABC-type amino acid transport system, permea... 123 2e-28 Cj0468 [E] COG0765 ABC-type amino acid transport system, permeas... 123 2e-28 BS_glnP [E] COG0765 ABC-type amino acid transport system, permea... 111 7e-25 >STM0592 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 335 Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 17/178 (9%), Positives = 44/178 (24%), Gaps = 6/178 (3%) Query: 1 VGVLQMAKNRLVSSIARGYAELFRGLPIVITLFIVFFMLPEAGIYVNSYISAMIALSVWS 60 V + A L R L ++ + + ++ L V + Sbjct: 40 VLEAFTGVCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGILGVNN 99 Query: 61 SSNISVAVRGAIQSIPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQS 120 ++ ++ + A+ + + + + ++ L + L+ + Sbjct: 100 GASFAIVLGAALFGFSTPLEQLFMAFSGALIASLIVAFTGSQGGGQLSPVRLTLAGVALG 159 Query: 121 TTLSVLIGNLDFLKSAQLVIERVEIMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRLE 178 L L + L R A + V P+ + Sbjct: 160 AVLEGLTSGIALLNPEVYDQLRF------WQAGSLDIRSLQTLKVALAPVVIAGIVAL 211 >SP0710 [E] COG0765 ABC-type amino acid transport system, permease component Length = 225 Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 113/185 (61%), Gaps = 6/185 (3%) Query: 1 VGVLQMAKNRLVSSIARGYAELFRGLPIVITLFIVFFMLPEA-GIYVNSYISAMIALSVW 59 +G++ + +R++ + R Y E R +P ++ LFIV+F L I ++ SA+I ++W Sbjct: 43 MGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFGLARNFNINISGETSAIIVFTLW 102 Query: 60 SSSNISVAVRGAIQSIPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQ 119 ++ + VRGAI S+P QFE+ +LGL++VQ ++I+PQ RR+LP I L++ +++ Sbjct: 103 GTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIK 162 Query: 120 STTLSVLIGNLDFLKSAQLVIE--RVEIMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRL 177 +T+L VLIG ++ K Q +I+ R+ I + +F IY YF +CYP+S + L Sbjct: 163 TTSLVVLIGVVEVTKVGQQIIDSNRLTI---PTASFWIYGTILILYFAVCYPISKLSTHL 219 Query: 178 ERSYR 182 E+ +R Sbjct: 220 EKHWR 224 >mlr2204 [E] COG0765 ABC-type amino acid transport system, permease component Length = 224 Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 107/179 (59%), Gaps = 6/179 (3%) Query: 1 VGVLQMAKNRLVSSIARGYAELFRGLPIVITLFIVFFMLPEAGIYVNSYISAMIALSVWS 60 +G+L+ NRL+S I + +L RG P ++ +F++FF+LPE GI ++++ + +IAL+ + Sbjct: 41 LGILRTGGNRLLSGIIGAWVDLIRGTPFLVQIFLIFFILPEFGIELDAFTAGIIALTNLA 100 Query: 61 SSNISVAVRGAIQSIPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQS 120 + I V I+S+P Q EAA + GLS Q MR V+LPQA R ++P ++G L++ Sbjct: 101 ACFICEIVAAGIRSVPTGQVEAALASGLSRWQRMRQVVLPQAMRIVMPPLVGQYVLLIKD 160 Query: 121 TTLSVLIGNLDFLKSAQLVIERVEIMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRLER 179 +++ IG D + LV++RV ++ YF++CYPL M A+RLER Sbjct: 161 SSVVSAIGLTDLTRVGWLVVQRVP------NGLLVFFLVGVGYFIVCYPLIMLARRLER 213 >Cj0468 [E] COG0765 ABC-type amino acid transport system, permease component Length = 218 Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 112/182 (61%), Gaps = 3/182 (1%) Query: 1 VGVLQMAKNRLVSSIARGYAELFRGLPIVITLFIVFFMLPEA-GIYVNSYISAMIALSVW 59 +G+L KN + + R E R +P+++ LF+V+F P G ++S +A+I S+W Sbjct: 38 LGILMSFKNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIW 97 Query: 60 SSSNISVAVRGAIQSIPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQ 119 + VR ++QSIP Q+E+A SLGL++VQ+ YVI+PQA RR+ P + LL+ +++ Sbjct: 98 GCFEMMDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIK 157 Query: 120 STTLSVLIGNLDFLKSAQLVIERVEIMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRLER 179 STT + LIG ++ +K Q +IE + F IY +F++CYP+++++++LE+ Sbjct: 158 STTFAYLIGAVELVKVGQQIIEFHN--RNDFAPFIIYGLIFFIFFILCYPITLYSRKLEK 215 Query: 180 SY 181 + Sbjct: 216 KW 217 >BS_glnP [E] COG0765 ABC-type amino acid transport system, permease component Length = 219 Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 19/177 (10%), Positives = 46/177 (25%), Gaps = 3/177 (1%) Query: 2 GVLQMAKNRLVSSIARGYAELFRGLPIVITLFIVFFMLPEAGIYVNSYISAMIALSVWSS 61 G + + + +A + E+ RG PIV+ + ++F LP A + +++ + Sbjct: 41 GFARTFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMIN 100 Query: 62 SNISVAVRGAIQSIPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQST 121 S +A + + L L + + ++ Sbjct: 101 SGAYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIK 160 Query: 122 TLSVLIGNLDFLKSAQLVIERVEIMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRLE 178 S+ I + Q + + + Sbjct: 161 DTSLFIVIGVAELTRQGQEII---AGNFRALEIWSAVAVFYLIITLVLSFILRRLER 214 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 11,125,650 Number of extensions: 341538 Number of successful extensions: 1604 Number of sequences better than 1.0e-05: 195 Number of HSP's gapped: 1462 Number of HSP's successfully gapped: 195 Length of query: 182 Length of database: 38,378,431 Length adjustment: 100 Effective length of query: 82 Effective length of database: 26,845,031 Effective search space: 2201292542 Effective search space used: 2201292542 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 112 (47.8 bits)