BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0100.p (242 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZglnP [E] COG0765 ABC-type amino acid transport system, permease... 112 6e-25 BS_glnP [E] COG0765 ABC-type amino acid transport system, permea... 112 6e-25 glnP [E] COG0765 ABC-type amino acid transport system, permease ... 112 6e-25 ZglnP [E] COG0765 ABC-type amino acid transport system, permease... 112 6e-25 ECs0888 [E] COG0765 ABC-type amino acid transport system, permea... 112 6e-25 >ZglnP [E] COG0765 ABC-type amino acid transport system, permease component Length = 219 Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 2/217 (0%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 + FD+ I +P+L+ G KMT++ISVL + L+IGL ART + + + V+++ Sbjct: 1 MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIE 60 Query: 61 IIRNTPLLVHIFFVYFGLPVI--GIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXX 118 +IR TP++V + F+YF LP+ +++D T +VT+ + GA+ E RG ++ Sbjct: 61 VIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGF 120 Query: 119 XXXXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDR 178 RW+ +R++I+PL R P N + IK+++ IGV ELT + Sbjct: 121 REAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEI 180 Query: 179 MAYDFKTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 +A +F+ E+ S++ ++ERR+ Sbjct: 181 IAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMK 217 >BS_glnP [E] COG0765 ABC-type amino acid transport system, permease component Length = 219 Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 2/217 (0%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 + FD+ I +P+L+ G KMT++ISVL + L+IGL ART + + + V+++ Sbjct: 1 MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIE 60 Query: 61 IIRNTPLLVHIFFVYFGLPVI--GIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXX 118 +IR TP++V + F+YF LP+ +++D T +VT+ + GA+ E RG ++ Sbjct: 61 VIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGF 120 Query: 119 XXXXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDR 178 RW+ +R++I+PL R P N + IK+++ IGV ELT + Sbjct: 121 REAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEI 180 Query: 179 MAYDFKTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 +A +F+ E+ S++ ++ERR+ Sbjct: 181 IAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMK 217 >glnP [E] COG0765 ABC-type amino acid transport system, permease component Length = 219 Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 2/217 (0%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 + FD+ I +P+L+ G KMT++ISVL + L+IGL ART + + + V+++ Sbjct: 1 MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIE 60 Query: 61 IIRNTPLLVHIFFVYFGLPVI--GIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXX 118 +IR TP++V + F+YF LP+ +++D T +VT+ + GA+ E RG ++ Sbjct: 61 VIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGF 120 Query: 119 XXXXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDR 178 RW+ +R++I+PL R P N + IK+++ IGV ELT + Sbjct: 121 REAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEI 180 Query: 179 MAYDFKTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 +A +F+ E+ S++ ++ERR+ Sbjct: 181 IAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMK 217 Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 2/217 (0%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 + FD+ I +P+L+ G KMT++ISVL + L+IGL ART + + + V+++ Sbjct: 1 MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIE 60 Query: 61 IIRNTPLLVHIFFVYFGLPVI--GIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXX 118 +IR TP++V + F+YF LP+ +++D T +VT+ + GA+ E RG ++ Sbjct: 61 VIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGF 120 Query: 119 XXXXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDR 178 RW+ +R++I+PL R P N + IK+++ IGV ELT + Sbjct: 121 REAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEI 180 Query: 179 MAYDFKTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 +A +F+ E+ S++ ++ERR+ Sbjct: 181 IAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMK 217 >ECs0888 [E] COG0765 ABC-type amino acid transport system, permease component Length = 219 Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 2/217 (0%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 + FD+ I +P+L+ G KMT++ISVL + L+IGL ART + + + V+++ Sbjct: 1 MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIE 60 Query: 61 IIRNTPLLVHIFFVYFGLPVI--GIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXX 118 +IR TP++V + F+YF LP+ +++D T +VT+ + GA+ E RG ++ Sbjct: 61 VIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGF 120 Query: 119 XXXXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDR 178 RW+ +R++I+PL R P N + IK+++ IGV ELT + Sbjct: 121 REAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEI 180 Query: 179 MAYDFKTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 +A +F+ E+ S++ ++ERR+ Sbjct: 181 IAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMK 217 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.145 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,853,882 Number of extensions: 492547 Number of successful extensions: 1891 Number of sequences better than 1.0e-05: 188 Number of HSP's gapped: 1719 Number of HSP's successfully gapped: 188 Length of query: 242 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 139 Effective length of database: 26,499,029 Effective search space: 3683365031 Effective search space used: 3683365031 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 114 (48.5 bits)