BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0099.p (246 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2353 [E] COG1126 ABC-type polar amino acid transport system, ... 302 4e-82 BH1463 [E] COG1126 ABC-type polar amino acid transport system, A... 294 1e-79 Cj0469 [E] COG1126 ABC-type polar amino acid transport system, A... 285 5e-77 lin0841 [E] COG1126 ABC-type polar amino acid transport system, ... 283 2e-76 BS_glnQ [E] COG1126 ABC-type polar amino acid transport system, ... 283 2e-76 >lin2353 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 64 Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 0/239 (0%), Positives = 0/239 (0%) Query: 8 LTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFID 67 F + + + + + G Sbjct: 2 RYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNGG 61 Query: 68 EAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELL 127 Sbjct: 62 121 Query: 128 KQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKA 187 Sbjct: 122 181 Query: 188 LAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 Sbjct: 182 240 >BH1463 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 240 Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 132/239 (55%), Positives = 184/239 (76%) Query: 8 LTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFID 67 + +++LHK FG L++L+G+ E+ +V+ +IGPSGSGKST LRC+N LE G ++ID Sbjct: 2 INVKDLHKSFGSLEVLKGITTEIQKGDVVAVIGPSGSGKSTFLRCLNLLEVPTSGHVWID 61 Query: 68 EAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELL 127 + I + ++ K+R +IGMVFQ ++LFPH+TVMENL AP+KV+ +KAE + + E LL Sbjct: 62 DEEITHPKTNVGKLRTKIGMVFQHFHLFPHMTVMENLTFAPMKVKGVSKAEAIAKGESLL 121 Query: 128 KQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKA 187 ++VG+ +K D YPS+LSGGQ+QRVAIAR+L M+PEV+LFDE TSALDPE V++VL VMK Sbjct: 122 QKVGLLEKRDEYPSRLSGGQKQRVAIARALAMDPEVMLFDEPTSALDPEMVKEVLAVMKD 181 Query: 188 LAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 LA TG TM+IVTHEMGF ++V DR++F+DQG+++E PP+Q F P+ ER R FL V+ Sbjct: 182 LAETGMTMVIVTHEMGFAKEVADRVLFLDQGILLEDLPPKQFFAAPKSERARDFLEKVL 240 >Cj0469 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 253 Score = 285 bits (729), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 135/235 (57%), Positives = 175/235 (74%) Query: 8 LTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFID 67 L I NL K +G L+ +N EV ++EV+VI+GPSG GKSTLLRCINGLE I G I+ID Sbjct: 4 LKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKSTLLRCINGLEEIASGNIYID 63 Query: 68 EAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELL 127 I+ ++RQ++GMVFQSY LF HL+V EN+LL P+KVQK+ K EVL A+ L Sbjct: 64 NEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILLGPMKVQKRKKDEVLKEAKIWL 123 Query: 128 KQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKA 187 ++VG+ K +YP +LSGGQ+QR+AI RSL MNPE++LFDEVT+ALDPE VR+VL+VM Sbjct: 124 EKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELMLFDEVTAALDPEIVREVLEVMLN 183 Query: 188 LAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFL 242 LA G TM+IVTHEMGF + V D+IIFMD+G I+E+ P+ F NP+ ER ++FL Sbjct: 184 LAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIEENDPKSFFKNPKSERAKKFL 238 >lin0841 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 64 Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 0/240 (0%), Positives = 0/240 (0%) Query: 7 KLTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFI 66 ++ ++ ++ ++ G + + Sbjct: 3 YDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNGGV 62 Query: 67 DEAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEEL 126 Sbjct: 63 122 Query: 127 LKQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMK 186 Sbjct: 123 182 Query: 187 ALAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 Sbjct: 183 242 >BS_glnQ [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 242 Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 181/239 (75%) Query: 8 LTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFID 67 +T +N++K +G+ +L+ +N ++ EV+VIIGPSGSGKSTLLRCIN LE IN+G + ++ Sbjct: 2 ITFQNVNKHYGDFHVLKQINLQIEKGEVVVIIGPSGSGKSTLLRCINRLESINEGVLTVN 61 Query: 68 EAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELL 127 AI + +VRQ IGMVFQ ++L+PH TV++N++LAP+KV +++ + A L Sbjct: 62 GTAINDRKTDINQVRQNIGMVFQHFHLYPHKTVLQNIMLAPVKVLRQSPEQAKETARYYL 121 Query: 128 KQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKA 187 ++VG+ DKAD+YPSQLSGGQQQRVAIAR L M PEV+LFDE TSALDPE + +VLDVMK Sbjct: 122 EKVGIPDKADAYPSQLSGGQQQRVAIARGLAMKPEVMLFDEPTSALDPEMIGEVLDVMKT 181 Query: 188 LAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 LA G TM++VTHEMGF ++V DRI+F+D+G I+E+ P + + NP+EER R FL ++ Sbjct: 182 LAKEGMTMVVVTHEMGFAKEVADRIVFIDEGKILEEAVPAEFYANPKEERARLFLSRIL 240 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,560,628 Number of extensions: 793211 Number of successful extensions: 19648 Number of sequences better than 1.0e-05: 2189 Number of HSP's gapped: 15517 Number of HSP's successfully gapped: 2436 Length of query: 246 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 142 Effective length of database: 26,383,695 Effective search space: 3746484690 Effective search space used: 3746484690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)