BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0098.p (307 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cj0982c [ET] COG0834 ABC-type amino acid transport/signal transd... 164 1e-40 jhp1099 [ET] COG0834 ABC-type amino acid transport/signal transd... 155 8e-38 HP1172 [ET] COG0834 ABC-type amino acid transport/signal transdu... 152 6e-37 BS_glnH [ET] COG0834 ABC-type amino acid transport/signal transd... 135 1e-31 TM0593 [ET] COG0834 ABC-type amino acid transport/signal transdu... 124 3e-28 >Cj0982c [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 279 Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 133/230 (57%), Gaps = 7/230 (3%) Query: 67 EAVKERGKLVVGVKVDYPPLGYLDENGNNAGYEIGVVRKMAEYAFGDPNAVEFIPVNATN 126 + +K+ G + +GV D PP GY+DE GNN GY+I + +++A+ FGD N V+F+ V A N Sbjct: 33 DKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAAN 92 Query: 127 RIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGITSIPDLAGKKVI 186 R+ +L S K+D I A T +R +Q+DF + + VP+DS ITS+ DL K ++ Sbjct: 93 RVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLL 152 Query: 187 VIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFIKTSPEYKI 246 + KG+T Y +N P + +K + N + F AL D R DA+ HD L+ ++K P++K+ Sbjct: 153 LNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKM 212 Query: 247 ----VGEQVAFAPMAMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEEYL 292 +G + AP +K + E+ F++ + K+ QE +F +E L Sbjct: 213 GIKELGNKDVIAP---AVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETL 259 >jhp1099 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 277 Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 140/244 (57%), Gaps = 10/244 (4%) Query: 67 EAVKERGKLVVGVKVDYPPLGYLDENGNNAGYEIGVVRKMAEYAFGDPNAVEFIPVNATN 126 E +K+RG L VGV D PP G +D GN GY++ + ++MA GD N +EFIPV A+ Sbjct: 36 EVIKQRGVLKVGVFSDKPPFGSVDSKGNYQGYDVVIAKRMALDLLGDENKIEFIPVEASA 95 Query: 127 RIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGITSIPDLAGKKVI 186 R+ +L + K+D I A T+ER+K +DF + A+ V+ +D I +I +L K++I Sbjct: 96 RVEFLKANKVDIIMANFTRTKEREKVVDFANPYMK-VALGVISKDGVIKNIEELKDKELI 154 Query: 187 VIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFIKTSPEYKI 246 V KG+T Y +N P + +K E N + F AL + +A A+ HD L+ ++K PE+K+ Sbjct: 155 VNKGTTADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWVKQHPEFKL 214 Query: 247 ----VGEQVAFAPMAMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEEYL-PKAGD-LDP 300 +G++ AP +K P++L +LN ++ + D+ K +E L P GD + P Sbjct: 215 GITSLGDKDVIAP---AIKKGNPKLLEWLNNEIDSLISSDFLKEAYQETLEPIYGDGIKP 271 Query: 301 MEMI 304 E+I Sbjct: 272 EEII 275 >HP1172 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 277 Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 138/244 (56%), Gaps = 10/244 (4%) Query: 67 EAVKERGKLVVGVKVDYPPLGYLDENGNNAGYEIGVVRKMAEYAFGDPNAVEFIPVNATN 126 E +K+RG L VGV D PP G +D G GY++ + ++MA GD N +EFIPV A+ Sbjct: 36 EVIKQRGVLKVGVFSDKPPFGSVDSKGKYQGYDVVIAKRMALDLLGDENKIEFIPVEASA 95 Query: 127 RIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGITSIPDLAGKKVI 186 R+ +L + K+D I A T+ER+K +DF + A+ VV +D I +I +L K++I Sbjct: 96 RVEFLKANKVDIIMANFTRTKEREKVVDFAKPYMK-VALGVVSKDGVIKNIEELKDKELI 154 Query: 187 VIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFIKTSPEYKI 246 V KG+T Y +N P + +K E N + F AL + +A A+ HD L+ + K PE+K+ Sbjct: 155 VNKGTTADFYFTKNYPNIKLLKFEQNTETFLALLNNKATALAHDNTLLLAWTKQHPEFKL 214 Query: 247 ----VGEQVAFAPMAMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEEYL-PKAGD-LDP 300 +G++ AP +K P++L +LN ++ + D+ K +E L P GD + P Sbjct: 215 GITSLGDKDVIAP---AIKKGNPKLLEWLNNEIDSLISSDFLKEAYQETLAPVYGDEIKP 271 Query: 301 MEMI 304 E+I Sbjct: 272 EEII 275 >BS_glnH [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 273 Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 135/244 (55%), Gaps = 9/244 (3%) Query: 61 DSLALPEAVKERGKLVVGVKVDYPPLGYLD-ENGNNAGYEIGVVRKMAEYAFGDPNAVEF 119 D+LA A+K+ K+V GVK D G + +G G++I + +++A+ GD +F Sbjct: 37 DTLA---AIKDNDKIVFGVKTDTRLFGLKNPSSGEIEGFDIDIAKQIAKDILGDEKKAQF 93 Query: 120 IPVNATNRIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGITSIPD 179 V + RIP L + ID I AT+ +TEERKK++DF+ +F+ G +V + S I S+ + Sbjct: 94 KEVTSKTRIPMLQNGDIDAIVATMTITEERKKEVDFSDVYFEAGQSLLVKKGSKIKSVEN 153 Query: 180 LA-GKKVIVIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFI 238 L G KV+ +KGST S + E P A ++ E+ A+AF ALK G+ DA+ D ++ Sbjct: 154 LGKGSKVLAVKGSTSSQNIREKAPEASVLEFENYAEAFTALKSGQGDALTTDNAILYGMA 213 Query: 239 KTSPEYKIVGEQVAFAPMAMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEEYLPKAGDL 298 + Y++ G+ P + +K + + +N SL+KM+ + + + ++++ + Sbjct: 214 DENKNYQLTGKPFTDEPYGIAVKKGQSALAKEINASLKKMKSDGRYDEIYKKWIKE---- 269 Query: 299 DPME 302 DP E Sbjct: 270 DPAE 273 >TM0593 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 246 Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 67 EAVKERGKLVVGVKVDYPPLGYLDENGNNAGYEIGVVRKMAEYAFGDPNAVEFIPVNAT- 125 + +K RG L+VG+ D+PP ++DENGN G+++ + +++A VE V+ T Sbjct: 22 DEIKSRGYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRL-----GVELKIVDMTF 76 Query: 126 -NRIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGI--TSIPDLAG 182 IP L +KKID I + + +TEERKK + F+ +FD G V VV +DS + DL G Sbjct: 77 DGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDFRPKTYEDLVG 136 Query: 183 KKVIVIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFIKTSP 242 K V V G+TG + + + ++ + DAF LK GRADA+ D+ F+ +P Sbjct: 137 KTVAVQIGTTGDIEVSKY-DGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNP 195 Query: 243 EYKIVGEQVAFAPMAMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEEYLPK 294 + I ++ + RK + ++L F+N L ++++ Y VLIE++ + Sbjct: 196 DLVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELKKSPY-DVLIEKWFSE 246 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,340,547 Number of extensions: 830785 Number of successful extensions: 1783 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 1602 Number of HSP's successfully gapped: 149 Length of query: 307 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 201 Effective length of database: 26,153,027 Effective search space: 5256758427 Effective search space used: 5256758427 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)