BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0091.p
         (76 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3884 [K] COG1733 Predicted transcriptional regulators               142   1e-34
BS_ytcD [K] COG1733 Predicted transcriptional regulators               95   2e-20
L133547 [K] COG1733 Predicted transcriptional regulators               84   4e-17
lin0869 [K] COG1733 Predicted transcriptional regulators               79   1e-15
FN1904 [K] COG1733 Predicted transcriptional regulators                75   3e-14

>BH3884 [K] COG1733 Predicted transcriptional regulators
          Length = 128

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 72/76 (94%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           MP +TQKMLTTQLRGLEKDEI+TRKVYNE+PP+VEYELT YGWGLKPALD LCYWGEDHL
Sbjct: 50  MPAITQKMLTTQLRGLEKDEIITRKVYNEVPPKVEYELTPYGWGLKPALDLLCYWGEDHL 109

Query: 61  EKIHGDKSKVLEEFRG 76
           EK++GDKSKVLEEF+ 
Sbjct: 110 EKVYGDKSKVLEEFQS 125


>BS_ytcD [K] COG1733 Predicted transcriptional regulators
          Length = 126

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 54/73 (73%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           MP +TQKMLT QLR LE D ++ R VYN++PP+VEYEL+ YG  L+  LD LC WG +H+
Sbjct: 43  MPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDMLCAWGANHI 102

Query: 61  EKIHGDKSKVLEE 73
            +++GD   VLEE
Sbjct: 103 NRVYGDTFSVLEE 115


>L133547 [K] COG1733 Predicted transcriptional regulators
          Length = 115

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           +PG++QKMLT QLR LE D I+ RKVYN++PP+VEY L+ YG  L   LD LC WGE H+
Sbjct: 42  IPGISQKMLTQQLRELEIDNIIVRKVYNQVPPKVEYSLSPYGETLNGLLDILCSWGEGHV 101

Query: 61  E--KIHGDKSKVLE 72
           +  K  G++ +VLE
Sbjct: 102 QTLKSMGEEVQVLE 115


>lin0869 [K] COG1733 Predicted transcriptional regulators
          Length = 117

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           +P +TQKMLT QLR LEK  ++ RKVY +IPP+VEY L+ YG  L   L+ LC WGE+H+
Sbjct: 42  IPNITQKMLTQQLRELEKSGVIIRKVYEQIPPKVEYSLSEYGESLSEILNKLCLWGENHV 101

Query: 61  E 61
           +
Sbjct: 102 D 102


>FN1904 [K] COG1733 Predicted transcriptional regulators
          Length = 148

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           +P + ++MLT QLR LE+D ++ RKVY  +PP+VEY+LT YG  L P L  L  WG+D+ 
Sbjct: 74  IPSINERMLTRQLRELEEDNLIERKVYPVVPPKVEYKLTEYGKSLIPILKSLVLWGKDYA 133

Query: 61  EKIHGDKSKV 70
           + I  D  K+
Sbjct: 134 KAIKFDNFKM 143


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,039,050
Number of extensions: 207500
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 45
Length of query: 76
Length of database: 38,378,431
Length adjustment: 47
Effective length of query: 29
Effective length of database: 32,957,733
Effective search space: 955774257
Effective search space used: 955774257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)