BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0086.p (296 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot... 188 7e-48 BH0401_1 [K] COG2207 AraC-type DNA-binding domain-containing pro... 94 3e-19 BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins 94 3e-19 lin2267 [K] COG2207 AraC-type DNA-binding domain-containing prot... 88 2e-17 BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing prot... 87 2e-17 >CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 295 Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 94/253 (37%), Positives = 136/253 (53%) Query: 42 TFPHHWHEHLEFLFIESGEAVFECGRTPFSVRAGDLIAVNSNELHYGISASDDLLYYAII 101 F HWHEHL+ + +G A EC + F V G + +NSNELHY S S++L +Y I Sbjct: 32 NFKRHWHEHLQIYYFTAGTAYLECAQNKFDVTTGSIAIINSNELHYLESHSNNLKFYTIR 91 Query: 102 ADTALLHSAASDSAETKFIAPIRQNRLLFSNHVSGDQHISGCALTIIRELERREFGYELA 161 + L S D +TK++AP+ NR+ F N + D I C TI++E + GYELA Sbjct: 92 IEPTFLFSNKEDLLQTKYLAPLALNRITFKNLIENDLQILECIKTILKEYSSKNIGYELA 151 Query: 162 VKAEXXXXXXXXXXXHGVTELSQAEQTRRIQTIERFAPVLRHIDTHYQEPIFVEGLAALA 221 VKA + L++ E R + + +F V R I+ Y E + + LA Sbjct: 152 VKANIYQLIVYLLRGYVDKILNENEFEERKRILNKFQCVFRLIEEKYTEKLTLNELADCV 211 Query: 222 GLSRFHFSRLFKELTGHTVSEYVNAVRLDRADYMLRHTQLTVSEIAAATGFNDIYYFSRT 281 S HF R FK++TG T ++Y+N +RL ++ L+ T L ++EIA GF++ YFSR Sbjct: 212 NFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYLKQTDLNITEIAIKCGFDNNNYFSRL 271 Query: 282 FKKHKQRTPSSVR 294 FKKH TP+ R Sbjct: 272 FKKHYDMTPTKYR 284 >BH0401_1 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 141 Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/99 (49%), Positives = 68/99 (68%) Query: 196 RFAPVLRHIDTHYQEPIFVEGLAALAGLSRFHFSRLFKELTGHTVSEYVNAVRLDRADYM 255 RF V ++I+THY++ I ++ LA + LS++HFSRLFKELTG + YVN VR+ +A + Sbjct: 8 RFHAVFQYIETHYKDRIDLDTLANRSHLSKYHFSRLFKELTGDSPMAYVNKVRVQKAIPL 67 Query: 256 LRHTQLTVSEIAAATGFNDIYYFSRTFKKHKQRTPSSVR 294 L T+ TV EIA+ GF+ + F+ TFKKH TPS VR Sbjct: 68 LTSTKKTVLEIASLCGFDSVSTFNATFKKHYDLTPSYVR 106 >BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 298 Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 12/284 (4%) Query: 12 DKHLREPMDMPDPGFPIKVHTQRFDREGVVTFPHHWHEHLEFLFIESGEAVFECGRTPFS 71 D++L+E +D+ PI H + P HWH+ L+F+ I GEA F+ Sbjct: 9 DENLKESIDLWTFMLPIISHRTTIRKNIHGYMPLHWHDELQFVVIIQGEARFQVNEEAII 68 Query: 72 VRAGDLIAVNSNELHYGISASDDLLYYAIIADTALLHSAASDSAETKFIAPIRQNR---- 127 V+ GD + +NS LH + Y + A S S T ++AP Q Sbjct: 69 VQEGDGLFINSGCLHMVEDGNGSNCVYICLNVPA--QSIISRELYTAYVAPYVQATNLPY 126 Query: 128 -LLFSNHVSGDQHISGCALTIIRELERREFGYELAVKAEXXXXXXXXXXXHGVTELSQAE 186 L+ S+ + G Q+I L I + LE + YE+ + + E Q+ Sbjct: 127 VLIPSSEMWG-QNIIEATLNIHQCLEEQPPYYEMDITTKLTVIWKSLITNGFPLEYDQSA 185 Query: 187 QTRRIQTIERFAPVLRHIDTHYQEPIFVEGLAALAGLSRFHFSRLFKELTGHTVSEYVNA 246 + +R +L+ I HY E I ++ +A LSR R FK T +YV Sbjct: 186 MIKN----QRMKAMLQWIHLHYGENIRLDDIAKAGQLSRSECCRYFKRTLKMTPLQYVTD 241 Query: 247 VRLDRADYMLRHTQLTVSEIAAATGFNDIYYFSRTFKKHKQRTP 290 R+ ++ +L+ + V+++A GFN YF F+K TP Sbjct: 242 YRIQKSVTLLQQPESNVTDVAYQVGFNSTSYFIDQFRKAMNMTP 285 >lin2267 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 292 Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/304 (22%), Positives = 125/304 (41%), Gaps = 43/304 (14%) Query: 15 LREPMDMP--DPGFPIKVHTQRFDREGVVTFPHHWHEHLEFLFIESGEAVFECGRTPFSV 72 + E +++P + FP + F EG V HWH+ +E ++ G P + Sbjct: 1 MSEYLEIPELNKAFPFR----SFVNEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQL 56 Query: 73 RAGDLIAVNSNELHYGISASD--------DLLYYA--------------IIADTALLHSA 110 G++ +N ++HY +++ + DL + ++ + A L Sbjct: 57 NEGEIQIINGGDVHYFLASPNSERIVIQFDLSLFQEEMQMDGQNGTLREMLTEMAHLSRE 116 Query: 111 ASDSAETKFIAPIRQNRLLFSNHVSGDQHISGCALTIIRELERREFGYELAVKAEXXXXX 170 + K + IR L SN G +I L I L RE Sbjct: 117 WPEETTAKVQSLIRNIHLESSNDSPGKHYILKADLLAIIGLIYREI-------------- 162 Query: 171 XXXXXXHGVTELSQAEQTRRIQTIERFAPVLRHIDTHYQEPIFVEGLAALAGLSRFHFSR 230 + +S+ + +T+++ + +++ HYQEP+ ++ +A G S ++F++ Sbjct: 163 -PQKKTQPDSVISEKAVLKSKETLQKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTK 221 Query: 231 LFKELTGHTVSEYVNAVRLDRADYMLRHTQLTVSEIAAATGFNDIYYFSRTFKKHKQRTP 290 FK TG T ++N RL++A +ML + V+E+A GF+ + F FK+ P Sbjct: 222 FFKRNTGMTFVTFLNDYRLNKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAP 281 Query: 291 SSVR 294 R Sbjct: 282 LKYR 285 >BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 291 Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 10/287 (3%) Query: 12 DKHLREPMDMPDPGFPIKVHTQRFDREGVVTFPHHWHEHLEFLFIESGEAVFECGRTPFS 71 D++L+E + P+ + ++ P HWH+ ++F+ I G A+F+ Sbjct: 7 DQNLKELTEHRTVELPVACYKTTINQNINGYIPLHWHDEIQFVLILKGIALFQINEEKIE 66 Query: 72 VRAGDLIAVNSNELHYGISASDDLLYYAIIADTALLHSAASDSAETKFIAPIRQNRLLFS 131 V GD + +NS LH Y + + H S + ++ P + L Sbjct: 67 VHEGDGLFINSGYLHMAEEKEGSDCTYICLNVSP--HFVLSQELYSSYVQPYMFSTNLPY 124 Query: 132 NHVSGDQHISGCALTIIREL----ERREFGYELAVKAEXXXXXXXXXXXHGVTELSQAEQ 187 ++G+Q + L ++++ +++ YE+ + + E Q+E Sbjct: 125 LFLAGNQQWAKNILDAVKKINQLIQQKTSLYEIDITMQLTLMWKNLVVNGFQLEYDQSEM 184 Query: 188 TRRIQTIERFAPVLRHIDTHYQEPIFVEGLAALAGLSRFHFSRLFKELTGHTVSEYVNAV 247 + R +L I HY E I +E +A LSR R FK + T YV Sbjct: 185 IKS----HRMKQMLNWIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDY 240 Query: 248 RLDRADYMLRHTQLTVSEIAAATGFNDIYYFSRTFKKHKQRTPSSVR 294 R+ ++ +L+H + V+E++ GFN YF F++ TP S + Sbjct: 241 RIQKSLLLLQHPESNVTEVSYQVGFNSTSYFISKFQQAMNMTPLSYK 287 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,019,632 Number of extensions: 856243 Number of successful extensions: 2125 Number of sequences better than 1.0e-05: 816 Number of HSP's gapped: 2121 Number of HSP's successfully gapped: 816 Length of query: 296 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 190 Effective length of database: 26,153,027 Effective search space: 4969075130 Effective search space used: 4969075130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 115 (48.9 bits)