BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0084.p
         (181 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1706 [K] COG0789 Predicted transcriptional regulators                71   7e-13

>BH1706 [K] COG0789 Predicted transcriptional regulators
          Length = 174

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 96/178 (53%), Gaps = 13/178 (7%)

Query: 5   KTKDAAELLSVSQTTIKRWAAMFPDYFPKDRFGHYIFSEQEISLLKSIKERINHGEVLEY 64
           KTK+ +E L V+ TT++RW   F      +  GH +F ++ +++LK+I+ ++  G+ +  
Sbjct: 6   KTKEVSEQLGVNPTTVQRWVKFFGIQCETNEHGHLLFEKEHLTVLKAIQNQLKSGKKMRD 65

Query: 65  MNLGSAAG-IQPPVSQQENPLHHTQDWP--MGDMLSRIDYIERSLDHKADEVVSVQLLQQ 121
           + +      IQ P +Q   P+  T+ +       + +I  +E+ L  KAD+VVS Q+L+ 
Sbjct: 66  VVIEENEQLIQKPETQ---PMVATEQYEQRTKQFMEKIAELEKQLSQKADDVVSYQILKH 122

Query: 122 RAELEDLRQMIKQLAVSLETIQKPGAPSLSSHDELHPVAAKKLKTPPRKRGLLRNIFS 179
           RAE++++ + ++ L + +  +++             P+AA  +  P RKR  +R +FS
Sbjct: 123 RAEIDEMFKTLQSLELRMAKVEEQLEKQQEE----FPLAAGDV--PKRKRSFMR-LFS 173


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,515,714
Number of extensions: 486445
Number of successful extensions: 1018
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 81
Effective length of database: 26,845,031
Effective search space: 2174447511
Effective search space used: 2174447511
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)