BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0067.p (601 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0240 [TK] COG2197 Response regulator containing a CheY-like r... 172 2e-42 CAC1455 [TK] COG2197 Response regulator containing a CheY-like r... 167 6e-41 CAC0865 [TK] COG2197 Response regulator containing a CheY-like r... 157 4e-38 BS_yfiK [TK] COG2197 Response regulator containing a CheY-like r... 155 2e-37 all4635 [TK] COG2197 Response regulator containing a CheY-like r... 148 3e-35 >CAC0240 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 208 Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 130/195 (66%), Gaps = 4/195 (2%) Query: 390 ILLADDQPLVRESLRLLLGEEKDFRL-RTAASGKQALEQCAAEQPDIVLMDIHMPEMDGL 448 +L+ DD L+RESL +LL E + + T A+G++A + C +PDIVLMDI MP MDG+ Sbjct: 3 VLIVDDDALIRESLSILLDLEDEIEIIGTCANGQEAFDFCKNNRPDIVLMDIRMPIMDGV 62 Query: 449 EATRQLKEKWPEVRVIIITTFEEITYAAEALRLGAEGYLLKTLHPKELAATIRLIYGGGT 508 T+ +KE + +++V+I+TTF++ Y EAL+ GAEGY+LK + +++ + G Sbjct: 63 LGTKVIKESFKDIKVVILTTFKDDEYIKEALKNGAEGYILKNQSSDSIIDSLKAVVNGNM 122 Query: 509 MISQEVAQ---QLFQDQQLEAPLNPYDLTERELEVLQELTEGLRNKQIAQKLHLSEGTVR 565 + Q VA+ ++ + L Y+LTERE+EVL+ + +GL NK+IA KL+LSEGTVR Sbjct: 123 VFEQNVAKTISNFIKEDKSNNGLEQYNLTEREMEVLRNIGDGLSNKEIASKLYLSEGTVR 182 Query: 566 NYISAIYLKLQVGDR 580 NYI+++ KL++ DR Sbjct: 183 NYITSLLEKLELRDR 197 >CAC1455 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 225 Score = 167 bits (422), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 129/204 (63%), Gaps = 11/204 (5%) Query: 388 IDILLADDQPLVRESLRLLLGEEKDFRLR-TAASGKQALEQCAAEQPDIVLMDIHMPEMD 446 I +L+ADDQ L+R+SL+++L KD + TA +G + +E +PD++LMD+ MPEMD Sbjct: 2 IKVLIADDQELIRQSLKIVLSANKDIEIVGTACNGNEVVESVRKYKPDVILMDVRMPEMD 61 Query: 447 GLEATRQLKEKWPEVRVIIITTFEEITYAAEALRLGAEGYLLKTLHPKELAATIRLIYGG 506 G++ T+ +KE +P +++I++TTF++ Y AL+ GA GYLLK + EL I + G Sbjct: 62 GVQCTKVIKESYPNIKIIVLTTFDDDEYIFNALKYGASGYLLKGVSMDELVRAIHTVVNG 121 Query: 507 GTMISQEVAQQLFQ--------DQQLEAPL--NPYDLTERELEVLQELTEGLRNKQIAQK 556 G MI+ ++ ++F+ D ++A N D+ + E +++ + GL NK+IA+K Sbjct: 122 GAMINPDITAKVFKLFSQMAQGDISIQAGTKKNTDDICDAEWNIIKCVGFGLSNKEIAKK 181 Query: 557 LHLSEGTVRNYISAIYLKLQVGDR 580 L LSEGTVRNY+S I KL DR Sbjct: 182 LRLSEGTVRNYLSNILNKLNFRDR 205 >CAC0865 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 218 Score = 157 bits (398), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 132/202 (65%), Gaps = 8/202 (3%) Query: 387 RIDILLADDQPLVRESLRLLLGEEKDFRLR-TAASGKQALEQCAAEQPDIVLMDIHMPEM 445 I +++ DD+ LV + L+++L +D ++ TA +G++AL C PD+VLMDI MP+ Sbjct: 3 NIKVVIVDDEKLVVDGLKIILETYEDIKVVGTAKNGEEALRVCRQSSPDVVLMDIRMPKC 62 Query: 446 DGLEATRQLKEKWPEVRVIIITTFEEITYAAEALRLGAEGYLLKTLHPKELAATIRLIYG 505 DG+ T+ +K+++ +++++I+TTF ++ Y EAL+ GA GY+LK + + I+ + Sbjct: 63 DGVLGTKLIKKEFKDIKILILTTFNDVKYIHEALKYGASGYILKDSDYELIYEGIKAAFK 122 Query: 506 GGTMISQEVAQQLF-------QDQQLEAPLNPYDLTERELEVLQELTEGLRNKQIAQKLH 558 G +I+ EVA ++ ++Q LE YDL+++E+ +++E+ GL NK+IA+KL Sbjct: 123 GNVVINPEVASKILSENGEYNKEQALEEVKTKYDLSDKEINIVREIASGLSNKEIAEKLF 182 Query: 559 LSEGTVRNYISAIYLKLQVGDR 580 LSEGT++N IS I+ KL + DR Sbjct: 183 LSEGTIKNNISIIFSKLNLRDR 204 >BS_yfiK [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 195 Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 0/208 (0%), Positives = 0/208 (0%), Gaps = 13/208 (6%) Query: 388 IDILLADDQPLVRESLRLLLG--EEKDFRLRTAASGKQALEQCAAEQPDIVLMDIHMPEM 445 LL+ + T+ +Q+ A +++ + + Sbjct: 2 TPTLLSAFWTYTLITAMTPGPNNILALS-SATSHGFRQSTRVLAGMSLGFLIVMLLCAGI 60 Query: 446 DGLEATRQLKEKWPEVRVIIITTFEEITYAAEALRLGAEGYLLKTLHPKELAATIRLIYG 505 A A + A + Sbjct: 61 SFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQAKPISFWASFALQFVNVKI 120 Query: 506 GGTMISQEVAQQLFQD----------QQLEAPLNPYDLTERELEVLQELTEGLRNKQIAQ 555 ++ L Q L ++ L + +Q+ Sbjct: 121 ILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCWALAGHLFQRLFRQYGRQLNI 180 Query: 556 KLHLSEGTVRNYISAIYLKLQVGDRDEA 583 Sbjct: 181 208 >all4635 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 219 Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 7/203 (3%) Query: 388 IDILLADDQPLVRESLRLLLGEEKDFRLR-TAASGKQALEQCAAEQPDIVLMDIHMPEMD 446 I +LL DDQ L+R+ LR LL E D + A +GK A++ PD+VLMD+ MP MD Sbjct: 2 IKVLLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIMD 61 Query: 447 GLEATRQLKEKWPEVRVIIITTFEEITYAAEALRLGAEGYLLKTLHPKELAATIRLIYGG 506 G+ AT+++++ +P V+V+++TTF++ Y AL+ GA GYLLK +ELA IR + G Sbjct: 62 GVAATQEIQQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVAIRAVEKG 121 Query: 507 GTMISQEVAQQL---FQDQQLEAPLNPY---DLTERELEVLQELTEGLRNKQIAQKLHLS 560 T + + ++L FQ P P DLT RE EVL+ + G N++IAQ+L++S Sbjct: 122 YTQLGPGIVKKLLVQFQSTPNHTPPAPTHLADLTPREKEVLRLIAAGANNREIAQQLYIS 181 Query: 561 EGTVRNYISAIYLKLQVGDRDEA 583 EGTV+N+++ I +L + DR +A Sbjct: 182 EGTVKNHVTNILNRLNLRDRTQA 204 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 38,331,877 Number of extensions: 1503888 Number of successful extensions: 4424 Number of sequences better than 1.0e-05: 540 Number of HSP's gapped: 4135 Number of HSP's successfully gapped: 540 Length of query: 601 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 489 Effective length of database: 25,461,023 Effective search space: 12450440247 Effective search space used: 12450440247 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 119 (50.4 bits)