BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0056.p
         (93 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all1103 [K] COG0640 Predicted transcriptional regulators               57   9e-09
MJ1325 [K] COG0640 Predicted transcriptional regulators                55   3e-08
pli0036 [K] COG0640 Predicted transcriptional regulators               54   5e-08
sll1957 [K] COG0640 Predicted transcriptional regulators               54   7e-08
CAC2242 [K] COG0640 Predicted transcriptional regulators               52   2e-07

>all1103 [K] COG0640 Predicted transcriptional regulators
          Length = 112

 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 7  DLVQAVKVYKALGEPTRLKIALMLIKQEN--QCVTAIGEQLGHVAGSTLSHHLKQLTESG 64
          + VQ   ++K LGEP RL++   +  Q +   CV  + E LG ++  T+SHHLK L E G
Sbjct: 23 EAVQTAAIFKVLGEPARLQLLSFIANQPSGEACVCELTEPLG-LSQPTVSHHLKVLYEVG 81

Query: 65 LIQSQKNGSFIHYSVDQE 82
          L+  ++ G++I+Y +  E
Sbjct: 82 LLAKERRGTWIYYRLIPE 99


>MJ1325 [K] COG0640 Predicted transcriptional regulators
          Length = 89

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 10 QAVKVYKALGEPTRLKIALMLIKQENQCVTAIGEQLGHVAGSTLSHHLKQLTESGLIQSQ 69
          +A +++KA G+PTRL I  +L +  + CV  I ++L      T+SHHL  L ++G+++++
Sbjct: 6  KAAEIFKAFGDPTRLMILKLLAENGSMCVCKIIDELKK-PQPTISHHLNILKKAGIVKAR 64

Query: 70 KNGSF-IHYSVDQEV 83
          K G++  +Y VD  V
Sbjct: 65 KEGTWNFYYIVDDRV 79


>pli0036 [K] COG0640 Predicted transcriptional regulators
          Length = 121

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 4  VDHDLVQAVKVYKALGEPTRLKIALMLIKQENQCVTAIGEQLGHVAGSTLSHHLKQLTES 63
          +D++L    KV+KALG+P R++I  ML   E +C   + E        TLSHH+K L  +
Sbjct: 1  MDYELT--AKVFKALGDPKRVQIVDMLSCGE-RCACDLLEHF-EFTQPTLSHHMKVLMNA 56

Query: 64 GLIQSQKNGSFIHYSVDQEVAK 85
          G++Q++K+G++ +YS++ E  K
Sbjct: 57 GIVQARKSGTWHNYSLNAENMK 78


>sll1957 [K] COG0640 Predicted transcriptional regulators
          Length = 104

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 15 YKALGEPTRLKIALMLIKQENQCVTAIGEQLGHVAGSTLSHHLKQLTESGLIQSQKNGSF 74
          ++AL +P RL++ L L++ + QCV  + +QL  ++ S LS HLK+L ++ L+ ++++G +
Sbjct: 13 FQALSDPIRLQV-LTLLENQEQCVCDLCDQLN-ISQSKLSFHLKRLRDAELVHTRQDGRW 70

Query: 75 IHYSVDQEVAKKFAPYL 91
          I+Y ++ E       YL
Sbjct: 71 IYYRLNPEQFHHLRHYL 87


>CAC2242 [K] COG0640 Predicted transcriptional regulators
          Length = 122

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 5   DHDLVQAVKVYKALGEPTRLKIALMLIKQENQCVTAIGEQLGHVAGSTLSHHLKQLTESG 64
           D +L +   ++K  G+ TR+KI   L K+E  CV  I   L  +  S +SH LK L +S 
Sbjct: 31  DEELYELSDLFKVFGDSTRIKIICALFKEE-MCVCDIA-YLLQMKQSAISHQLKILRQSK 88

Query: 65  LIQSQKNGSFIHYSVDQE 82
           L++ ++ G  ++YS+D E
Sbjct: 89  LVKYRREGKVVYYSLDDE 106


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,998,010
Number of extensions: 186565
Number of successful extensions: 634
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 13
Length of query: 93
Length of database: 38,378,431
Length adjustment: 62
Effective length of query: 31
Effective length of database: 31,227,723
Effective search space: 968059413
Effective search space used: 968059413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)