BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0055.p (394 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ybcL [G] COG2814 Arabinose efflux permease 337 2e-92 BS_ydhL [G] COG2814 Arabinose efflux permease 212 7e-55 mll2510 [G] COG2814 Arabinose efflux permease 157 3e-38 AGl1145 [G] COG2814 Arabinose efflux permease 154 2e-37 SMb21168 [G] COG2814 Arabinose efflux permease 145 9e-35 >BS_ybcL [G] COG2814 Arabinose efflux permease Length = 183 Score = 337 bits (865), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 0/357 (0%), Positives = 0/357 (0%) Query: 1 MIKSWKVYILAIISFLVGTSEFVIAGILDLVSRDVGVTIAAAGQLISVYSISYAVGTPIL 60 M +LA I+F + F + + + +G + S ++ + Sbjct: 1 MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGV 60 Query: 61 IAATSKLSRRTLMLAALALFFIGNLITVVSTGYPMLVGARVVLALSTGVFTVVALTVSAQ 120 T + A + V + T + T + Sbjct: 61 PEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDF 120 Query: 121 IAGPGKQGSAIATIMMGFNLSLILGVPLGRVIASTYDWKMIFYGIGLLSFIAMLVILMAL 180 + + ++ + + + + IA I Sbjct: 121 GYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVY 180 Query: 181 PKSQGEANVPLKEQXXXXXXXXXXXXXSISFFWMVGYTIIYTFITPFLMNITGMSNGMVS 240 Sbjct: 181 240 Query: 241 IALFSFGIASLLGAQAGGYGADKLGIPRTLNGSLMIHAGILILMSLFAHTSIAVFPLLLL 300 Sbjct: 241 300 Query: 301 WSFFAWSTGPIQQVYMISLAPSAAGILLSLNTSFIQXXXXXXXXXXXXXXERFSLQS 357 Sbjct: 301 357 >BS_ydhL [G] COG2814 Arabinose efflux permease Length = 125 Score = 212 bits (540), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 0/323 (0%), Positives = 0/323 (0%), Gaps = 6/323 (1%) Query: 17 VGTSEFVIAGILDLVSRDVGVTIAAAGQLISVYSISYAVGTPILIAATSKLSRRTLMLAA 76 + + + G + + + A Sbjct: 52 EFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSDGEKQEVLRLCRQRLMRKLRAN 111 Query: 77 LALFFIGNLITVVSTGYPMLVGARVVLALSTGVFTVVALTVSAQIAGPGKQGSAIATIMM 136 Sbjct: 112 171 Query: 137 GFNLSLILGVPLGRVIASTYDWKMIFYGIGLLSFIAMLVILMALPKSQGEANVPLKEQXX 196 Sbjct: 172 231 Query: 197 XXXXXXXXXXXSISFFWMVGYTIIYTFITPFLMNITGMSNGMVSIALFSFGIASLLGAQA 256 Sbjct: 232 291 Query: 257 GGYGADKLGIPRTL---NGSLMIHAGILILMSLFAHTSIAVFPLLLLWSFFAWSTGPIQQ 313 Sbjct: 292 --- 348 Query: 314 VYMISLAPSAAGILLSLNTSFIQ 336 Sbjct: 349 371 >mll2510 [G] COG2814 Arabinose efflux permease Length = 1091 Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 18/334 (5%), Positives = 47/334 (14%), Gaps = 6/334 (1%) Query: 6 KVYILAIISFLVGTSEFVIAGILDLVSRDVGVTIAAAGQLISVYSISYAVGTPILIAATS 65 V + + T G I S + + Sbjct: 4 YVQKDIQGTTEPQFRNSHSRTSGTVTLYLPVSTFVGTGFFIHPQSKEKLMKRHLNTCYRL 63 Query: 66 KLSRRTLMLAALALFFIGNLITVVSTGYPMLVGARVVLALSTGVFTVVALTVSAQIAGPG 125 + T + L + L+ + TV+ Sbjct: 64 VWNHMTGAFVVASELARARGKRGGVAVALSLAAVTSLPVLAADIVVHPGETVNGGTLANH 123 Query: 126 KQGSAIATIMMGFNLSLILGVPLGRVIASTYDWKMIFYGIGLLSFIAMLVILMALPKSQG 185 T + + P + L + Sbjct: 124 DNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGLQRVNPGGSVSD 183 Query: 186 EANVPLKEQXXXXXXXXXXXXXSISFFWMVGYTIIYTFITPFLMNITGMSNGMVSIALFS 245 Q + + + ++ Sbjct: 184 TVISAGGGQSLQGRAVNTTLNGGEQWMHEGAIATGTVINDKGWQVVKPGTVATDTVVNTG 243 Query: 246 FGIASLLGAQAGGYGADKLGIPRTLNGSLMIHAGILILMS-----LFAHTS-IAVFPLLL 299 G + T+N + + + Sbjct: 244 AEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGGDQTVHGHALDTT 303 Query: 300 LWSFFAWSTGPIQQVYMISLAPSAAGILLSLNTS 333 L + + + + + Sbjct: 304 LNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAG 337 >AGl1145 [G] COG2814 Arabinose efflux permease Length = 134 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 0/330 (0%), Positives = 0/330 (0%), Gaps = 6/330 (1%) Query: 7 VYILAIISFLVGTSEFVIAGILDLVSRDVGVTIAAAGQLISVYSISYAVGTPILIAATSK 66 + + V + +++ ++ Sbjct: 43 QELPKAKAPAVLQKLAQAVAAEGFSGIQINKALSSIDAHQETSGSGRIQTLRVVARQKGA 102 Query: 67 LSRRTLMLAALALFFIGNLITVVSTGYPMLVGARVVLALSTGVFTVVALTVSAQIAGPGK 126 Sbjct: 103 162 Query: 127 QGSAIATIMMGFNLSLILGVPLGRVIASTYDWKMIFYGIGLLSFIAMLVILMALPKSQGE 186 Sbjct: 163 222 Query: 187 A-NVPLKEQXXXXXXXXXXXXXSISFFWMVGYTIIYTFITPFLMNITGMSNGMVSIALFS 245 Sbjct: 223 282 Query: 246 FGIASLLGAQAGGYGADKLGIPRTLNGSLMIHAGILILMSLFAHTSIAVFPLLLLWSFFA 305 Sbjct: 283 - 341 Query: 306 WSTGPIQQVYMISLA----PSAAGILLSLN 331 Sbjct: 342 371 >SMb21168 [G] COG2814 Arabinose efflux permease Length = 394 Score = 145 bits (367), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/336 (27%), Positives = 175/336 (52%), Gaps = 6/336 (1%) Query: 6 KVYILAIISFLVGTSEFVIAGILDLVSRDVGVTIAAAGQLISVYSISYAVGTPILIAATS 65 ++ LA+ SF + T FV + +L ++ D TI +G LI+++S+SYA+G P+L A Sbjct: 4 RIIWLAVGSFTMSTVGFVFSSLLPSIAADTHTTIPRSGHLITLFSLSYAIGAPLLSALAG 63 Query: 66 KLSRRTLMLAALALFFIGNLITVVSTGYPMLVGARVVLALSTGVFTVVALTVSAQIAGPG 125 RR L++ A+ +F +GN I +S + L+ A++V+ +++G+F A + +AGP Sbjct: 64 AADRRRLLVTAMLVFVVGNCIAAMSVSFTTLLLAQIVMGMASGLFAATAQAAAVSLAGPE 123 Query: 126 KQGSAIATIMMGFNLSLILGVPLGRVIASTYDWKMIFYGIGLLSFIAMLVILMALPKSQG 185 + AI+ ++ G ++ LG PLG +IA+ + W+ F + LL V+ + LP+ Sbjct: 124 HRALAISIVVGGTTFAVALGAPLGALIAAFWGWRGTFGAVALLGLTCAAVLWLRLPRGLS 183 Query: 186 EANVPLKEQXXXXXXXXXXXXXSISFFWMVGYTIIYTFITPFLMNITGMSNGMVSIALFS 245 + + E+ ++F ++ G +I +++ P ++ G+S + L + Sbjct: 184 GTKLTMSERFGAIGRPGVASSLMVTFLYLTGGFMIISYLAPLAIDGAGLSQLALPGLLLA 243 Query: 246 FGIASLLGAQAGGYGADKLGIPRTLNGSLMIHAGILILMSLFAH------TSIAVFPLLL 299 FG+ +++G + GY AD+LG R + SL+ + ++++ H + + +++ Sbjct: 244 FGVGAVIGNLSSGYLADRLGATRVVTASLISALAVSLMIAFGLHFLTRDLAGLLLIGIMV 303 Query: 300 LWSFFAWSTGPIQQVYMISLAPSAAGILLSLNTSFI 335 W W+ P Q ++ AP A + LSLN S I Sbjct: 304 PWGIVGWAFPPAQASRIVGFAPEVAHLTLSLNASAI 339 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,293,027 Number of extensions: 802433 Number of successful extensions: 3681 Number of sequences better than 1.0e-05: 90 Number of HSP's gapped: 3612 Number of HSP's successfully gapped: 90 Length of query: 394 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 286 Effective length of database: 25,922,359 Effective search space: 7413794674 Effective search space used: 7413794674 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 117 (49.7 bits)