BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0054.p
         (346 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2214 [M] COG0791 Cell wall-associated hydrolases (invasion-as...    89   9e-18
NMA0440 [M] COG0791 Cell wall-associated hydrolases (invasion-as...    89   1e-17
NMB2001 [M] COG0791 Cell wall-associated hydrolases (invasion-as...    89   2e-17
spr [M] COG0791 Cell wall-associated hydrolases (invasion-associ...    87   4e-17
RSc1177 [M] COG0791 Cell wall-associated hydrolases (invasion-as...    86   9e-17

>STM2214 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 190

 Score = 89.4 bits (220), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 5/111 (4%)

Query: 237 GTPYEFGASPDQTATFDCSSFVKRVFEDTLSIELPRVSYDQAKKGKEVGLDGLRPGDLLF 296
           G  Y  G S  +    DCSSFV+R F +   +ELPR +Y+Q + GK V  + LR GDL+ 
Sbjct: 81  GVRYRLGGSTKKGV--DCSSFVQRTFREQFGLELPRSTYEQQEMGKAVSRNNLRTGDLVL 138

Query: 297 FSARGLDIGHVAIYAGNNQILHTYSTKLNVHVEAFDG-QWKKRFVTARRIL 346
           F A G    HV IY GNNQ +H  ST   V + + +   WKKR+  ARR+L
Sbjct: 139 FRA-GSTGRHVGIYIGNNQFVHA-STSSGVIISSMNEPYWKKRYNEARRVL 187


>NMA0440 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 171

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 0/124 (0%), Positives = 0/124 (0%), Gaps = 3/124 (2%)

Query: 224 QAEALIAYGKTFLGTPYEFGASPDQTATFDCSSFVKRVFEDTLSIELPRVSYDQAKKGKE 283
                                                                       
Sbjct: 148 -                                                            206

Query: 284 VGLDGLRPGDLLFF-SARGLDIGHVAIYAGNNQILHTYSTKLNVHVEAFDGQ-WKKRFVT 341
                                                                       
Sbjct: 207                                                              266

Query: 342 ARRI 345
               
Sbjct: 267      270


>NMB2001 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 251

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 3/124 (2%)

Query: 224 QAEALIAYGKTFLGTPYEFGASPDQTATFDCSSFVKRVFEDTLSIELPRVSYDQAKKGKE 283
            A+ LI      LG  Y +G +   T  FDCS F++ +F+  + I LPR S +QA+ G  
Sbjct: 119 NADELIGNAMGLLGIAYRYGGTSVSTG-FDCSGFMQHIFKRAMGINLPRTSAEQARMGTP 177

Query: 284 VGLDGLRPGDLLFF-SARGLDIGHVAIYAGNNQILHTYSTKLNVHVEAFDGQ-WKKRFVT 341
           V    L+PGD++FF +  G  I HV +Y GNN+ +H   T  N+ + +   + W  ++  
Sbjct: 178 VARSELQPGDMVFFRTLGGSRISHVGLYIGNNRFIHAPRTGKNIEITSLSHKYWSGKYAF 237

Query: 342 ARRI 345
           ARR+
Sbjct: 238 ARRV 241


>spr [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 188

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 5/111 (4%)

Query: 237 GTPYEFGASPDQTATFDCSSFVKRVFEDTLSIELPRVSYDQAKKGKEVGLDGLRPGDLLF 296
           G  Y  G S  +    DCS FV+R F +   +ELPR +Y+Q + GK V    LR GDL+ 
Sbjct: 79  GVRYRLGGSTKKG--IDCSGFVQRTFREQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVL 136

Query: 297 FSARGLDIGHVAIYAGNNQILHTYSTKLNVHVEAFDG-QWKKRFVTARRIL 346
           F A G    HV IY GNNQ +H  ST   V + + +   WKKR+  ARR+L
Sbjct: 137 FRA-GSTGRHVGIYIGNNQFVHA-STSSGVIISSMNEPYWKKRYNEARRVL 185


>RSc1177 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 222

 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 2/111 (1%)

Query: 236 LGTPYEFGASPDQTATFDCSSFVKRVFEDTLSIELPRVSYDQAKKGKEVGLDGLRPGDLL 295
           +G  Y FG +  ++   DCS FV+ VF DT    LPR + + ++ G  V +  LRPGDL+
Sbjct: 77  IGLRYRFGGNTPESG-LDCSGFVRYVFHDTFGFLLPRRAVEMSRVGTSVDMKDLRPGDLV 135

Query: 296 FFSARGLDIGHVAIYAGNNQILHTYSTKLNVHVEAFDGQ-WKKRFVTARRI 345
           FF+       HVAIY G+N+++H  ST   + V+      W  R+  ARRI
Sbjct: 136 FFNTMHRTFSHVAIYVGDNKMVHAPSTGSKIRVDDMTASYWVSRYNGARRI 186


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 24,399,675
Number of extensions: 1070008
Number of successful extensions: 2658
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 2613
Number of HSP's successfully gapped: 58
Length of query: 346
Length of database: 38,378,431
Length adjustment: 107
Effective length of query: 239
Effective length of database: 26,037,693
Effective search space: 6223008627
Effective search space used: 6223008627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)