BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0045.p (230 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0820 [TK] COG0745 Response regulators consisting of a CheY-lik... 171 1e-42 BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-li... 154 1e-37 BS_resD [TK] COG0745 Response regulators consisting of a CheY-li... 135 4e-32 CAC0321 [TK] COG0745 Response regulators consisting of a CheY-li... 133 2e-31 CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li... 132 4e-31 >BH0820 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 234 Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 122/204 (59%), Gaps = 3/204 (1%) Query: 28 GYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPGMTGEELLQWXXXXXXXXXXXXSAKGEQ 87 GY AF G EA EQ + +VLLDLMLP G + LQW SAK Sbjct: 27 GYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRNGIDCLQWIRTKSVVPVLIMSAKDSD 86 Query: 88 QTKVSALRGGADDFITKPFDIEEVSARIDSHLRR---YAQIAPPAVPSVLQHNGLVLDPD 144 K L GADD+ITKPF + E++AR+ + +RR YAQ + A ++ + LV++ Sbjct: 87 VDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVNYAQASQSAENERIKIHELVVELS 146 Query: 145 SKTVMAEGAEVALTAREYEIVALLLSAPKKVFTKANLYESVWDEPYYGDDNTVNVHMSNL 204 S TV +G E+ LTA+E++I+ L ++ PKKVFTK LY SVW++ YY D+N +NVH+ L Sbjct: 147 SFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQLYRSVWNDDYYSDENVINVHIRRL 206 Query: 205 RSKLAKAAPGSEFIETVWGMGYRL 228 R K+ ++I+T+WG+GYR+ Sbjct: 207 REKIEDTPSKPQYIKTIWGIGYRM 230 >BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 215 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 0/205 (0%), Positives = 0/205 (0%), Gaps = 2/205 (0%) Query: 26 KSGYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPGMTGEELLQWXXXXXXXXXXXXSAKG 85 A +++ L LM +T L G Sbjct: 19 WCEQTRLAALVDPGGDAEKIKQEVDDSGLTLMQILLTHGHLDHVGAAAELAQHYGVPVFG 78 Query: 86 EQQTKVSALRGGADDFITKPFDIEEVSARIDSHLRRYAQIAP--PAVPSVLQHNGLVLDP 143 ++ L+G + + + Sbjct: 79 PEKEDEFWLQGLPAQSRMFGLEECQPLTPDRWLNEGDTISIGNVTLQVLHCPGHTPGHVV 138 Query: 144 DSKTVMAEGAEVALTAREYEIVALLLSAPKKVFTKANLYESVWDEPYYGDDNTVNVHMSN 203 + + + + + + + Sbjct: 139 FFDDRAKLLISGDVIFKGGVGRSDFPRGDHNQLISSIKDKLLPLGDDVIFIPGHGPLSTL 198 Query: 204 LRSKLAKAAPGSEFIETVWGMGYRL 228 Sbjct: 199 223 >BS_resD [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 240 Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 5/232 (2%) Query: 3 NSIHILVAEXXXXXXXXXXXXXRKSGYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPGMT 62 N ILV + + Y A +G EA+ + + ++LLDLM+PG Sbjct: 5 NETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTD 64 Query: 63 GEELLQWXXXXXXXXXXXXSAKGEQQTKVSALRGGADDFITKPFDIEEVSARIDSHLRRY 122 G E+ + +AKGE+ +V G DD+I KPF EV R+ + LRR Sbjct: 65 GIEVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 Query: 123 AQI----APPAVPSVLQHNGLVLDPDSKTVMAEGAEVALTAREYEIVALLLSAPKKVFTK 178 +Q A +VL + L +D D+ V A+G EV+LT + YE++ L P KV+ + Sbjct: 125 SQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKVYELLYFLAKTPDKVYDR 184 Query: 179 ANLYESVWDEPYYGDDNTVNVHMSNLRSKLAKAAP-GSEFIETVWGMGYRLK 229 L + VW ++GD TV+ H+ LR KL K +P ++ I TVWG+GY+ + Sbjct: 185 EKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFE 236 >CAC0321 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 230 Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 3/206 (1%) Query: 27 SGYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPGMTGEELLQWXXXXXXXXXXXXSAKGE 86 S + SG L +++ + +++LDLMLP + G E+ + SAK E Sbjct: 24 SNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDGFEICKQIRKIKNTPILMVSAKKE 83 Query: 87 QQTKVSALRGGADDFITKPFDIEEVSARIDSHLRRYAQIAPPAVPSV---LQHNGLVLDP 143 K+ L GADD++TKPF E+ AR+ +H+ RY ++ + ++ ++ GL ++ Sbjct: 84 DIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYERLVNSSNKNLDDEIEIRGLNINK 143 Query: 144 DSKTVMAEGAEVALTAREYEIVALLLSAPKKVFTKANLYESVWDEPYYGDDNTVNVHMSN 203 S+ V G E TA+E++++ L P +VF+K L++ +W +G+ TV VH+ Sbjct: 144 ASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKEELFDKIWGMDSFGEIATVTVHIKK 203 Query: 204 LRSKLAKAAPGSEFIETVWGMGYRLK 229 +R K+ K E+IETVWG GYR + Sbjct: 204 IREKIEKDTSNPEYIETVWGAGYRFR 229 >CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 233 Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 112/204 (54%), Gaps = 2/204 (0%) Query: 28 GYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPGMTGEELLQWXXXXXXXXXXXXSAKGEQ 87 G+ A +G EAL L+ + +VLLD+M+P M G SAKGE Sbjct: 27 GFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDGITTCMKIREDKNTPIIMLSAKGED 86 Query: 88 QTKVSALRGGADDFITKPFDIEEVSARIDSHLRRYAQIAPP--AVPSVLQHNGLVLDPDS 145 K+ L GADD+I+KPF+ E+ AR+ S +RRY ++ + + ++ + ++ D+ Sbjct: 87 MDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTKLNSTYESNSANIEVGEITINTDT 146 Query: 146 KTVMAEGAEVALTAREYEIVALLLSAPKKVFTKANLYESVWDEPYYGDDNTVNVHMSNLR 205 V V+LT RE++I+ LL VF+ +YESVW E +Y NTV VH+ +R Sbjct: 147 HEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIYESVWHEEFYDCHNTVMVHIRKIR 206 Query: 206 SKLAKAAPGSEFIETVWGMGYRLK 229 K+ K E+I+TVWG+GY+++ Sbjct: 207 EKIEKNPRKPEYIKTVWGVGYKIE 230 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.132 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,066,079 Number of extensions: 563451 Number of successful extensions: 1894 Number of sequences better than 1.0e-05: 246 Number of HSP's gapped: 1637 Number of HSP's successfully gapped: 246 Length of query: 230 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 127 Effective length of database: 26,499,029 Effective search space: 3365376683 Effective search space used: 3365376683 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)