BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0042.p (237 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0268 [V] COG1131 ABC-type multidrug transport system, ATPase ... 240 1e-63 SPy1674 [V] COG1131 ABC-type multidrug transport system, ATPase ... 200 1e-51 TM0793 [V] COG1131 ABC-type multidrug transport system, ATPase c... 197 2e-50 SP1381 [V] COG1131 ABC-type multidrug transport system, ATPase c... 191 7e-49 PAB1696 [V] COG1131 ABC-type multidrug transport system, ATPase ... 191 9e-49 >CAC0268 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 258 Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 109/241 (45%), Positives = 171/241 (70%), Gaps = 5/241 (2%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 ++ + + KSY G KAV++LN + G+I+GF+G NGAGK+TTI+ + G++ + G+I+ Sbjct: 15 VIELLNVNKSYNGKNKAVDNLNFTINSGEIFGFLGPNGAGKSTTIKMITGIIKADSGEIK 74 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 +DG++IK++P+ K K Y+PD+PD++ L GI+YLNF+ D++ V+ +DR+ I+ S Sbjct: 75 VDGLNIKENPIEAKRKIGYVPDSPDMFLRLKGIEYLNFMADIYDVTTSDRKERIESLSKY 134 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F + + L D I SYSHGM+QK+ ++ ALIH P + +LDEP GLDPKA++ LK +M + Sbjct: 135 FDMESALDDKIQSYSHGMRQKIVVMGALIHDPDVWILDEPMTGLDPKASYNLKEMMRKHA 194 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGK-----NSLEDVFLELID 235 SG +FFSTHVL+VAEKLC++I I+ G+++ G E+K K +SLE +FLEL++ Sbjct: 195 DSGKTVFFSTHVLEVAEKLCDRIGIVSKGKIVFCGTMNEMKQKLQEEGSSLERMFLELVE 254 Query: 236 N 236 + Sbjct: 255 D 255 >SPy1674 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 244 Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 154/236 (65%), Gaps = 4/236 (1%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 M+ H +K Y G K+A++DLN+ + G+I+G IGHNGAGKTTTI + +++ G++ Sbjct: 1 MIEFKHVSKLY-GDKEALSDLNVTINDGEIFGLIGHNGAGKTTTISILTSIIEASYGEVF 59 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 +DG + ++ A K + AY+PD+PD++ +LT +Y F+ ++ VS DRE + + + Sbjct: 60 VDGQLLTENREAIKKQIAYVPDSPDIFLNLTPNEYWQFLAKIYGVSDEDREERLAQLTTL 119 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F++ + I S+SHGM+QK+ +I AL+ P + +LDEP GLDP+A+ LK +M Sbjct: 120 FELKEEVNQTIDSFSHGMRQKVIVIGALVSNPNIWILDEPLTGLDPQASFDLKEMMKAHA 179 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGKNS---LEDVFLEL 233 +SG + FSTHVL VAE+LC++I I+K G+LI G +E+K + LE ++LEL Sbjct: 180 ASGHTVLFSTHVLSVAEQLCDRIGILKKGKLIFVGTIDELKEHHPDKDLESIYLEL 235 >TM0793 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 260 Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 97/222 (43%), Positives = 150/222 (67%), Gaps = 6/222 (2%) Query: 17 AVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIEIDGVSIKKDPVACKAK 76 AV+ ++L V G+IYGF+G NGAGKTTTI+ + GVL EG++EI G+ + + K Sbjct: 26 AVDHIDLSVRPGEIYGFLGPNGAGKTTTIKMLTGVLKPTEGEVEILGMKMSTHEIEIKKS 85 Query: 77 TAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDAFQITANLGDMISSYSH 136 IPD P +Y HLTG ++L+FI +++ + + + ++ I + +AF++ LG + SH Sbjct: 86 IGVIPDEPKIYSHLTGKEFLDFIIEIYDLKEEEIDKRIAELCEAFKVD-YLGKRVGEMSH 144 Query: 137 GMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELCSSGSAIFFSTHVLDVA 196 GMKQKL ++S + KPK++ LDEP VGLD K+A +LK ++ + G+AIF +TH+L++A Sbjct: 145 GMKQKLMLVSVFMRKPKVIFLDEPTVGLDAKSARILKLLLRKYADEGAAIFLTTHILEIA 204 Query: 197 EKLCNKIAIIKGGQLIAHGRTEEVK-----GKNSLEDVFLEL 233 EK+C++I II G+LIA G EE++ + SLED+FL+L Sbjct: 205 EKMCDRIGIINKGRLIAEGTMEELRKLAGQKEASLEDLFLQL 246 >SP1381 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 249 Score = 191 bits (486), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 149/236 (63%), Gaps = 4/236 (1%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 M+ + +K Y G K+A+++LNL +E G+I G IGHNGAGK+TTI+++V ++ G I Sbjct: 1 MIEFQNVSKLY-GDKEALSNLNLQIENGEIMGLIGHNGAGKSTTIKSLVSIISPSSGRIL 59 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 +DG + ++ +A K K Y+ D+PDL+ LT ++ I + +S++D E + + + Sbjct: 60 VDGQELSENRLAIKRKIGYVADSPDLFLRLTANEFWELIASSYDLSRSDLEASLARLLNV 119 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F N +I + SHGM+QK+ +I AL+ P + VLDEP GLDP+AA LK +M E Sbjct: 120 FDFAENRYQVIETLSHGMRQKVFVIGALLSDPDIWVLDEPLTGLDPQAAFDLKQMMKEHA 179 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKG---KNSLEDVFLEL 233 G + FSTHVL+VAE++C++IAI+K G LI G E+++ SLE ++L L Sbjct: 180 QKGKTVLFSTHVLEVAEQVCDRIAILKKGHLIYCGSVEDLRKDYPDQSLESIYLSL 235 >PAB1696 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 253 Score = 191 bits (485), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 92/236 (38%), Positives = 152/236 (64%), Gaps = 4/236 (1%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 M+ + + K + GGK+ + ++ V+ G+IYG +G NG+GK+TT+R + G++ EG + Sbjct: 1 MIIVENLRKRF-GGKEVLKGISFTVKDGEIYGLLGPNGSGKSTTMRILSGIITDFEGKVI 59 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 + GV + KDP+ K Y+P+ P LY+ LT ++ +F+G + + K E ++K +A Sbjct: 60 VGGVEVAKDPLQVKRIVGYVPETPALYESLTPAEFFSFVGGVRGIPKDILEERVRKLVEA 119 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F+I + +I + S G KQK+++IS+L+H PK+L+LDE GLDPK+A + + ++ E Sbjct: 120 FEIKKYMNQLIGTLSFGTKQKISLISSLLHDPKVLILDEAMNGLDPKSARIFRELLYEFK 179 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVK---GKNSLEDVFLEL 233 G +I FSTHVL +AE +C+++ II G++IA G EE+K + LEDVFL+L Sbjct: 180 EEGKSIVFSTHVLALAELICDRVGIIYQGRIIAEGTVEELKEISKEERLEDVFLKL 235 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,602,907 Number of extensions: 737592 Number of successful extensions: 8106 Number of sequences better than 1.0e-05: 1805 Number of HSP's gapped: 6436 Number of HSP's successfully gapped: 1929 Length of query: 237 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 134 Effective length of database: 26,499,029 Effective search space: 3550869886 Effective search space used: 3550869886 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)