BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0040.p (539 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1344 [G] COG1070 Sugar (pentulose and hexulose) kinases 655 0.0 HI1113 [G] COG1070 Sugar (pentulose and hexulose) kinases 67 9e-11 >CAC1344 [G] COG1070 Sugar (pentulose and hexulose) kinases Length = 534 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/532 (59%), Positives = 386/532 (72%) Query: 3 MDQNIKQAILKGETSLGIEFGSTRIKAVLIDYRFETIASGSYEWENLLVDGYWTYHLADI 62 +D+ Q I GETSLGIEFGSTRIKAVLI F +ASGS+EWE L +G WTY + +I Sbjct: 3 IDEKRVQEIKNGETSLGIEFGSTRIKAVLIANDFSILASGSFEWETSLENGVWTYSIDEI 62 Query: 63 IKGLQTAYSEMKLEVEQKYGVTLTTAGSIGFSAMMHGYMAFDDKGELLVPFRTWRNATTG 122 KGLQ +Y ++ EV++KYGV L+ GSIGFSAMMHGYMAFD+KGELLVPFRTWRN T Sbjct: 63 WKGLQYSYQKLFAEVKEKYGVVLSKIGSIGFSAMMHGYMAFDNKGELLVPFRTWRNTMTE 122 Query: 123 AAAKELSDTFKFNIPERWSIAHLYQAILNGEQHVPHARFITTLAGYIHWLLTGSKAIGIG 182 AAK+L+D FKFNIPERWSIAHLYQAIL E HV F+TTLAGYIHW LTG K +GIG Sbjct: 123 EAAKKLTDLFKFNIPERWSIAHLYQAILRNEPHVEKIDFLTTLAGYIHWQLTGEKVLGIG 182 Query: 183 DASGMFPIDEAAQDYNAPMIKQFDELIAAKGYPWKLRDLLPKVCHAGEQAGVLTEAGVKI 242 DASGMFPID +Y+ M++ F L K + L LLPKV AGE AGVLT G K Sbjct: 183 DASGMFPIDTQTHNYDKNMLETFKNLPEVKKHSLDLEKLLPKVLLAGENAGVLTLEGAKK 242 Query: 243 LDASGDLQPGIPLCPPEGDAGTGMVATNSVRKRTGNISVGTSVFAMIVLEQDLSAVYPEI 302 LD SG+LQPGIPLCPPEGDAGTGMVATNSV RTGN+S GTS+FAM+VLE+ L+ V+PEI Sbjct: 243 LDVSGNLQPGIPLCPPEGDAGTGMVATNSVAPRTGNVSAGTSIFAMVVLEKPLNRVHPEI 302 Query: 303 DMVTTPDGSPVGMVHANNCSSDINAWLGLFREFYEAMGQKADPNQLFSVMFKKALEAXXX 362 D+VTTP G V MVHANN SD+ AW+ +F++F EA+ + L+ ++ +A + Sbjct: 303 DIVTTPSGDLVAMVHANNGCSDLEAWVNIFQQFTEAINVDMRKDLLYMALYTQAFQGDPD 362 Query: 363 XXXXXXXXXFSGENITGMEKGRPLFVRSPESRFNLANFMRTHLYSAFAALKIGMDILTKK 422 F+GENITG+ +GRP+ VR +S FNL NFMR HL+++ ALKIGMDIL K Sbjct: 363 CGGVLAYNYFAGENITGVSEGRPMVVRKAKSNFNLPNFMRAHLFTSLGALKIGMDILLKD 422 Query: 423 ENVAIDSILAHGGLFKTPIVGQKMLAAALNVPVSVMATAGEGGAWGMAILAAYMSTKGQQ 482 E V +D +L HGGLFKTPIVGQ +A A+N PVSVM TAGEGGAWG+A+LA+Y+ +K Sbjct: 423 EAVKLDKLLGHGGLFKTPIVGQAAVAGAVNAPVSVMETAGEGGAWGIALLASYLRSKEND 482 Query: 483 EPLDDFLADKVFKAAEGHEIHPDSADVAGFELFMERYSNGLAIEQAAVDHLV 534 L +FL+ VF E+ PD DV GFE F+ERY G+AIEQAAV+HL+ Sbjct: 483 STLPEFLSKNVFAGYVAEEVQPDPKDVKGFEEFIERYKKGIAIEQAAVEHLI 534 >HI1113 [G] COG1070 Sugar (pentulose and hexulose) kinases Length = 511 Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 115/543 (21%), Positives = 202/543 (37%), Gaps = 91/543 (16%) Query: 18 LGIEFGSTRIKAVLIDYRFETIASGSYEWENLLV--DGYWTYHLADIIKGLQTAYSEMKL 75 +GI+ G+ KA+++D + + Y L+ +G I+ LQ A Sbjct: 21 IGIDCGTQGTKAIVLDSVQKKVIGVGYAKHELITQSNGRREQQPNWWIEALQQALQIALK 80 Query: 76 EVEQKYGVTLTTAGSIGFSAMMHGYMAFDDKGELLVPFRTWRN----------------- 118 + + + IG S HG + D L + W + Sbjct: 81 QAKNSPHFSPNLVKGIGISGQQHGLVMLDKNDRPLYKAKLWCDTETATENDILIEKLGGQ 140 Query: 119 ----------ATTGAAAKELSDTFKFNIPERWSIAHLYQAILNGEQHVPHARFITTLAGY 168 TG A +LS F+ N P+++ A++ + +L PH Y Sbjct: 141 TAVFEKLGIICQTGYTASKLS-WFRQNYPDKF--ANIRKIML------PH--------DY 183 Query: 169 IHWLLTGSKAIGIGDASGMFPIDEAAQDYNAPMIKQFDELIAAKGYPWKLRDLLPKVCHA 228 +++ LTG GDASG D +++ + K + + ++LPK+ A Sbjct: 184 LNYWLTGKFCTEFGDASGSGYFDVVKREWKREVFKYLAPEL-------NMDEVLPKLLSA 236 Query: 229 GEQAGVLTEAGVKILDASGDLQPGIPLCPPEGDAGTGMVATNSVRKRTGNISVGTSVFAM 288 ++ GV+ + + + GD G + T ++R+ +S+GTS Sbjct: 237 EQKIGVIKPEIATLF----GFNENVIVSTGGGDNMMGAIGTGNIREGIATMSLGTSGTLY 292 Query: 289 IVLEQDLSAVYPEIDMVTTPDGSPVGMVHANNCSSDINAWLGLFREFYEAMGQKADPNQL 348 ++ L + P I AN CSS+ N WL L M + QL Sbjct: 293 AYTQKPLLNLPPMI---------------ANFCSSN-NGWLPLVC----VMNITSSNKQL 332 Query: 349 FSV-------MFKKALEAXXXXXXXXXXXXFSGENITGMEKGRPLFVRSPESRFNLANFM 401 ++ + + A +A F+GE + + + + S F N Sbjct: 333 MNLLNIDIEELNQLAQQAPIGANGITILPFFNGERVPPLPNTKASILGLDSSNFTRENLC 392 Query: 402 RTHLYSAFAALKIGMDILTKKENVAIDSILAHGGLFKTPIVGQKMLAAALNVPVSVMATA 461 R + SA L+ G+D+ ++ + I GG K+ Q M+A +N V V Sbjct: 393 RAMMESATFTLRYGLDLF-RQAGLKTSQIRLIGGGAKSSFWRQ-MIADVMNSEV-VCLQE 449 Query: 462 GEGGAWGMAILAAYMSTKGQQEPLDDFLADKVFKAAEGHEIHPDSADVAGFELFMERYSN 521 E A G AI A + + +G+ E FL + E + +P+ + V ++ ERY Sbjct: 450 EEAAALGGAIQAMWANGEGELE----FLCETFIHLDENSKAYPNLSQVKNYQNAYERYLT 505 Query: 522 GLA 524 L+ Sbjct: 506 HLS 508 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 40,283,387 Number of extensions: 1708026 Number of successful extensions: 2797 Number of sequences better than 1.0e-05: 3 Number of HSP's gapped: 2804 Number of HSP's successfully gapped: 3 Length of query: 539 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 428 Effective length of database: 25,576,357 Effective search space: 10946680796 Effective search space used: 10946680796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)